Transcript Information: R_Transcript_158759.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value5.5E-202
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3631547402369
Replicate 21.9600506753546
Replicate 32.6891926739472
Condition 2: 8 Hour
Replicate 12.8399447322123
Replicate 22.3404600512698
Replicate 33.2862887686132
Condition 3: 24 Hour
Replicate 14.4811561491134
Replicate 22.7764045845281
Replicate 33.126814955271


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_158759.p1 GENE.R_Transcript_158759~~R_Transcript_158759.p1 ORF type:complete len:707 (+),score=127.07,SEO_N|PF14576.2|6.9e-131,SEO_C|PF14577.2|9.2e-107 R_Transcript_158759:59-2179(+)
ATGGCAAGTGCAGCAATACCTGCCAGGAAACACAGATTCAGGGGTGATCGTCATTTGTTCTCAACCTCTGATGACAGCGCAATGTTGAACCAACTTCGAGCCACACATGCTCCAGATGGTCGTGACATTAATGTGAAACCTCTTCTAAACATCATTGAGGACATTTTTCACCGTGCAACACCAATCATCCCTGGCGCTATTCAGGGAATGCAAGCACCCATGGATGCTCTGGATGACAAGACATTTCAAGCAGGCTATGGAGACATGATTGAACTATTGGCATACACTATAAATAAAATCTCCTGTGAGATATCTTGCAAGTGTTCTGGTGGTGGAGATGCACATGCAACAACAATGGCAATATTTAACATAGTCACAAACTATGCATGGGACGCGAAAGTAGTTCTCACTCTTGCAGCATTTGCAGTGTATTATGGTGAGTTTTGGTTGGTTGCACAACTTTACACAACAAACTCACTGGCCAAATCAGTTGCAATTCTCAAGCAAGTACCTGACATAATGGAGCGGTCCGATGCCCTAAAACCCAAGTATGAAGCCATTGCCAATCTGATCAGAGCAATGATCAACGTTACCAAGTGTATTGTGGAATTCAACGACCTCCCACCTCAGTATATAACCCCAGATACGCCAGCATATGAAAGTGCCAATGCTCTGATCCCCACAGCTGCTTACTGGATCATCCGGAGTATAGTAGCCTGTGCATCACAAATTGTGGGCCTCGTAAGCATGAGCTATGAGTTTATTTCTTCAACAACTGAGGCTTGGGAGCTATCAAGCTTGGCTCACAAGGTCAACAACATATACGAGCACCTAAGGAAGCAACTGGATCTTTGTTACCAACACATTGATGAGAAGAAACACACAGAAGCATATCAAATGCTCATTCGCTTATTTGAGGCACCCCATCTTGACAACATGAAAATTCTTCGAGTTCTTATTTATGCAAAGGATGATCAGCTGCCCTTATTTGATGGTTCTGCCAAAAAAAGGGTCAGCATTGACGTATTGAGGAGAAAAAATGCCTTACTACTAATTTCAGACCTGGACCTTTCCCATGAAGAGCTATCAATTCTTGATCAAATGTACCAAGAATCAAGGCAACATCCAACAAGGATGGAAAGTCAATATGAAGTTGTGTGGCTTCCAGTTGTTGACCGATCCACTGCCTGGACAGAACAAAGACAACAGCAGTTTGAGGCTCTGCAGTCATTGATGCCTTGGTACACAATTTACCACCCCTCGTTGCTTGATCCAGCTGTTATTAGGTACATAAAAGACATGTGGCACTTCAACAAGAAGCCCTTACTAGTTGTCCTGGACCCACAAGGTAAAGTAGCAAACCCCAATGCTCTTCACATGATGTGGATTTGGGGGAGTATGGCTTTCCCTTTTACCAGTGCAAGAGAAGAAGCACTTTGGAGGGAAGAGACCTGGAGGATGGAGTTGCTAGCAGATGCTATTGAGCCAATGCTCTTCCAATGGATGCAAGAGAGAAAATACATTTGCTTGTATGGAGGAGAAGACATGGATTGGATACTAAAATTTACCACTACGGCACAGATGGTTGCACAGCAAGCTGGCATCCCACTGGAAATGTTATATGTTGGCAAAAGTAACCTCAAGGAAAAGGTTCGTAAGAACAATGCTGCTATTATTGCTCAAGGCCTGAGCCATGTTCTGCCTGACATAACTCTAGTATGGTACTTCTGGGTGCGGCTGGAGAGCATGTGGCACTCCAAGATTCAGCACGGGAGGTCAGTCGAGAACGACCCCATAATGCAGGAAATAGTCACGATGATGAGCTACGATGCAAGTGATCAGGGTTGGGCTGTGATCAGTAGGGGGTCAGCAGAGATGGCTAAGGCCAAAGGGGACATCCTCTTGACATGCTTGACTGAGTTTGATAATTGGAAGCAAGATATCGAGCTGAAAGGGTTTGTGCAAGCACTCATCGACTATCTGCAGAAGCTACACACACCACATCACTGCAACCGCCTGATACTGCCAGGAACAACAGGAAGCATCCCTGAGAAGGTTGTTTGTGCAGAATGTGGCCGTTCCATGGAGAAGTTCATCATGTATCGATGCTGCACTGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_158759.p1 GENE.R_Transcript_158759~~R_Transcript_158759.p1 ORF type:complete len:707 (+),score=127.07,SEO_N|PF14576.2|6.9e-131,SEO_C|PF14577.2|9.2e-107 R_Transcript_158759:59-2179(+)
MASAAIPARKHRFRGDRHLFSTSDDSAMLNQLRATHAPDGRDINVKPLLNIIEDIFHRATPIIPGAIQGMQAPMDALDDKTFQAGYGDMIELLAYTINKISCEISCKCSGGGDAHATTMAIFNIVTNYAWDAKVVLTLAAFAVYYGEFWLVAQLYTTNSLAKSVAILKQVPDIMERSDALKPKYEAIANLIRAMINVTKCIVEFNDLPPQYITPDTPAYESANALIPTAAYWIIRSIVACASQIVGLVSMSYEFISSTTEAWELSSLAHKVNNIYEHLRKQLDLCYQHIDEKKHTEAYQMLIRLFEAPHLDNMKILRVLIYAKDDQLPLFDGSAKKRVSIDVLRRKNALLLISDLDLSHEELSILDQMYQESRQHPTRMESQYEVVWLPVVDRSTAWTEQRQQQFEALQSLMPWYTIYHPSLLDPAVIRYIKDMWHFNKKPLLVVLDPQGKVANPNALHMMWIWGSMAFPFTSAREEALWREETWRMELLADAIEPMLFQWMQERKYICLYGGEDMDWILKFTTTAQMVAQQAGIPLEMLYVGKSNLKEKVRKNNAAIIAQGLSHVLPDITLVWYFWVRLESMWHSKIQHGRSVENDPIMQEIVTMMSYDASDQGWAVISRGSAEMAKAKGDILLTCLTEFDNWKQDIELKGFVQALIDYLQKLHTPHHCNRLILPGTTGSIPEKVVCAECGRSMEKFIMYRCCTD*

Click here to download the sequence:
Link to NCBI Protein BLAST