Transcript Information: R_Transcript_158835.p1


Annotated TAIR IDAT5G16340.1
Annotated Gene NameAMP-dependent synthetase and ligase family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:5349255-5350907 | Reverse length=550
E-Value3E-45
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1631788843693
Replicate 21.13215345382
Replicate 31.2351672233219
Condition 2: 8 Hour
Replicate 10.36008624922419
Replicate 21.6441824883225
Replicate 31.4236557349323
Condition 3: 24 Hour
Replicate 11.4629975194125
Replicate 20.75679809918648
Replicate 30.75104869023667


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_158835.p1 GENE.R_Transcript_158835~~R_Transcript_158835.p1 ORF type:complete len:204 (+),score=6.18,AMP-binding|PF00501.24|6.3e-15 R_Transcript_158835:280-891(+)
ATGTCTGAGGCGATCCTAAATGCTATAAACACTCATCTCAATGCTAAATCAATCTCAACCATTCTTCACCATGTCGAGTCTAGGCTCGTCTTCGTTTACCATGAGCTTGTTCAACTTGTTGTTGAAGCTCTTTCTCTACTCCCTTCTAACCGTCCGCATCCTCTCATTGTCTTAATCTCGGACAGTGAAGCAATGTTTGCAAAAGATAATAAGAGTATAGATAGGAATGTAATAGATCAAAAGGCGCATGGTTTGATAAGGCAAAAAATAGGATCATCTTTGAGCATATGCAAGGTGTTCACTAATTATGAGGACATGATTCAGAAAGGTGATCCCAACTTTCACTGGATCCGACCCAAGAGTGAGTGGGACCCAATTGTCATCAACTACACATCAGGCACAACATCAGCCCCAAAAGGAGTTGTTCATTGTCACCGAGGGTCTTTTATTATGTCCCTAGATTCATTGATCAATTGGGCTGTCCCAAAACATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCTATGGACCTTACCATTGTTCCATTCCAATGGCTGGAACTTCTCATGGGGACGGCCGCCGTCGGGGCAACCAACATTTGCCTCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_158835.p1 GENE.R_Transcript_158835~~R_Transcript_158835.p1 ORF type:complete len:204 (+),score=6.18,AMP-binding|PF00501.24|6.3e-15 R_Transcript_158835:280-891(+)
MSEAILNAINTHLNAKSISTILHHVESRLVFVYHELVQLVVEALSLLPSNRPHPLIVLISDSEAMFAKDNKSIDRNVIDQKAHGLIRQKIGSSLSICKVFTNYEDMIQKGDPNFHWIRPKSEWDPIVINYTSGTTSAPKGVVHCHRGSFIMSLDSLINWAVPKHLFFFFFFFFFIYGPYHCSIPMAGTSHGDGRRRGNQHLPL*

Click here to download the sequence:
Link to NCBI Protein BLAST