Transcript Information: R_Transcript_158889.p1


Annotated TAIR IDAT1G57800.1
Annotated Gene Namezinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)VIM5, ORTH3
Annotation TypeHomolog
Chromosome Positionchr1:21408747-21412283 | Reverse length=660
E-Value1E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 124.998620437984
Replicate 224.191389610083
Replicate 321.313225415551
Condition 2: 8 Hour
Replicate 127.786133701004
Replicate 228.485819041163
Replicate 331.094498193185
Condition 3: 24 Hour
Replicate 130.044782502343
Replicate 224.644354499471
Replicate 328.263688226124


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_158889.p1 GENE.R_Transcript_158889~~R_Transcript_158889.p1 ORF type:5prime_partial len:230 (-),score=100.33 R_Transcript_158889:323-1012(-)
GTAAGAGAGAGAAATACTGGTGGAAGGCAACTTCGGACACAGAAAACTGCCATGAAATGCCCCTCATGCACCATGAACATCTCTGAATTTCTTCAAAATGTCCAGGTTAATAGGGAGCTAATGGGGGTGATAGAGTCCCTGATGCGCAAGTTTGAAGAGGAGGAGAAAGCAGAAGCTGCAGTTGAGGAAGAAAGTGCTGGCACTGTTGAAGATGAGGAGGAAGATGACCCTGATGGAGAGGAAGAGGACCCTGATGAAGAGGAGGCTGAGGATGATGAGGCTGTGGGCGCTGAAAATGAACTCTTAGAATCTGATGGAATTGAAAGCAAACCACCTGAGGAGGTTGCTGACATGTCAATCAAGAAATCTGAAGGCGAGAATGGTAATGCCAGTGAAGCTGTCAAGGATTCAGATGGTGGAGACAAGCCTGACCCTTCTGCCGTTCCTGCCAAACGAGGGTGTAAGAGGAAAAATGTTGCTGCTGAGAAATCCAGCGGCAAGAATGGTGCTGACAAGCCAGACCCTTCTGTTCCTGCCAAACGAGGTCGTAAGAGAAAAAATGATGGTGGCGCTGCTGGTGCGGGCGCTGCAAGAAGAACAAGAGGCAGGAAAGCCCAGACAGTTGCCGATGATGGAAATGTTTCCCCATCCAGTCCTCTTCATGTGCTCTCGGACAATGAGCTTGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_158889.p1 GENE.R_Transcript_158889~~R_Transcript_158889.p1 ORF type:5prime_partial len:230 (-),score=100.33 R_Transcript_158889:323-1012(-)
VRERNTGGRQLRTQKTAMKCPSCTMNISEFLQNVQVNRELMGVIESLMRKFEEEEKAEAAVEEESAGTVEDEEEDDPDGEEEDPDEEEAEDDEAVGAENELLESDGIESKPPEEVADMSIKKSEGENGNASEAVKDSDGGDKPDPSAVPAKRGCKRKNVAAEKSSGKNGADKPDPSVPAKRGRKRKNDGGAAGAGAARRTRGRKAQTVADDGNVSPSSPLHVLSDNELE*

Click here to download the sequence:
Link to NCBI Protein BLAST