Transcript Information: R_Transcript_160892.p1


Annotated TAIR IDAT3G25970.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:9500116-9502221 | Reverse length=701
E-Value6.1E-263
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.3853301247644
Replicate 20.83508013019367
Replicate 31.8872028133194
Condition 2: 8 Hour
Replicate 11.5999286755302
Replicate 21.6198934288359
Replicate 32.2947348653614
Condition 3: 24 Hour
Replicate 12.4131786006394
Replicate 22.4749509266415
Replicate 32.8914155339225


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_160892.p1 GENE.R_Transcript_160892~~R_Transcript_160892.p1 ORF type:complete len:704 (+),score=139.22,PPR_2|PF13041.2|0.00034,PPR_2|PF13041.2|2.5e-09,PPR_2|PF13041.2|0.94,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|7e-08,PPR_2|PF13041.2|38,PPR_2|PF13041.2|2.1e-09,PPR_2|PF13041.2|3.3e+03,PPR_2|PF13041.2|1.7e-07,PPR_2|PF13041.2|27,PPR_2|PF13041.2|5e+03,PPR_2|PF13041.2|2.5e+03,PPR|PF01535.16|0.00014,PPR|PF01535.16|0.00013,PPR|PF01535.16|9.6,PPR|PF01535.16|0.39,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|0.028,PPR|PF01535.16|0.36,PPR|PF01535.16|4.9e+02,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|1.3e+04,PPR|PF01535.16|8.4e-06,PPR|PF01535.16|2.4,PPR|PF01535.16|4.7e-05,PPR|PF01535.16|0.36,PPR|PF01535.16|0.22,PPR|PF01535.16|6.5e+02,PPR|PF01535.16|56,PPR|PF01535.16|8.6e+03,PPR_3|PF13812.2|0.37,PPR_3|PF13812.2|0.29,PPR_3|PF13812.2|3.5e+03,PPR_3|PF13812.2|62,PPR_3|PF13812.2|9e-05,PPR_3|PF13812.2|0.67,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|3.2e+02,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|9.7e+03,PPR_3|PF13812.2|73,PPR_3|PF13812.2|44,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|0.6,PPR_3|PF13812.2|8.1,PPR_3|PF13812.2|1e+04,PPR_1|PF12854.3|0.002,PPR_1|PF12854.3|0.73,PPR_1|PF12854.3|12,PPR_1|PF12854.3|0.22,PPR_1|PF12854.3|0.0021,PPR_1|PF12854.3|11,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|0.015,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|0.1 R_Transcript_160892:245-2356(+)
ATGAGGTCATTGAAATCAGCCCTCAGAAGCTCTATCTACGAGGTTTCAATAATCCATTGTCGGGCTTTGAAGTTGGGCATCATCCGAGACATATACACTGCCAACAACATCATTACGGGTTATGCAAGATGTGGTCAGTTGGGTATTGCACACCAACTGTTCGACGAAATGCGTCAAAGAGATACTGTGTCTTGGAACTCTGTGATTTCTGGATATGTAAATTCTGGGAATTTTGGCCCTTCTTGGGGTCTTTTGAATGATATGAGAAAAGCTGGGTTCTTGGTTGATGGGTACACTTTTGGTAGCCTTTTGAAGGGCATTGCTTTGAATGGTGAGATTGACTGTGGGGAGCAATTGCATTCTATGATCATTAAGTTGGGATGTCAATCTAATGTGTATACTGGGAGTGCCCTTTTGGATATGTATCACAAGTGTGGTAGGATTGATGATGCATTGATGGCTTTCAAGACTATGCCAGTGAGCAATTCTGTTTGTTGGAACGCTATGATTGCTGGTTTCGTTGAGCAGGGCGAGTTTGATACTGCATTTGAGCTTTTGGGGTCTATGGAAAGAGAGGGTGTGATGATTGAAGACGGGACACTTGCTCCGTTCTTAACTTTGCTTAATGGTGCTGAGTATTTCAAGTTAACTATGCAGCTTCATGGGAAGATCATCAAGAATGGGTTGGTTTGTTGTAATAATGTGTGCAATGCTTTGATCACATCATATTCTGAGTGTGGGTCATTGGAAAATGCTGAGAAGGTGTTTTATGAGGCTGTTGATGTCCATGATTCGGTAACCTGGAATTCCATGTTAGGTTCTTACCTTCTACATCATGAGGAAGGACTTGCACTTCAACTCTTTGTTAATATGCAACTTATTGGTTATGAACCTGATATTTATACATACACTAGTGTTGTGAGTGCTTGTTTCGAAGAGTCATATCAACTCCATGGAAAATGTTTCCACTCCTTAATAATAAAGAGGGGGCTAGAGAGATCCACGCCGATATCTAATGCACTGATAGCTATGTATCTAAAGTCGAGTGGAAAATCGATGGTGGATGCACTGAGGTTGTTTGAATCAATAGATCCTAAAGATTCTGTCTCTTGGAATTCTGTTTTGAAAGGGTTCTCACAGTTTGGCTTGAGCGAAGATGCTGTGAAATTCTTTGGGGATATGCGATCACATGATGTTGGGATTGATCACTATTCTTTTTCTGCTGTCCTAAGATCTTGTGCAGACTTAGCAGCCTTGCAGTTAGGTCGACAGGTTCATGCCTTGGCTCTTAAATCAGACTTGCAGTCAAATGAACATGTAGCTAGCTCGTTAGTTTGGATGTATTCAAAATGCGGCTTACTTGACCGTGCCAGAAGTGCCTTTGAAGAGACCCCTAAAGATAGCCCTATTACTTGGAACTTTATCATTTTTGGGTATGCCCAGCATGGGCAAGGCAAAATTGCCCTTGAGCTGTTCCATCAAATGACTGGATGTAAGGTGAAACTTGACCACATAACATTTGTCGCAGTTCTGACAGCTTGTAGCCATATGGGATGGGTGGAAGAAGGTCGACGTATTTTGGAAATCATGGAATCTGATTATGGTATTTCACCAAGAATGGAGCATTATGCTTGCGCAATTGACTTGTTTGGGCGAGCTGGGCTCTTAGATGAAGCAAAGGCCTTGGTCAAATCAATGCCTTTTGAGCCAGATGCAATGGTGTTGAAAACACTACTGGGTGCATGTAGAAGTTGTGGGGATGTTGAATTGGCAAGTCAGGTTGCAAATCAGCTGCTAGAAATCGAACCTGAGGAGCATTGTACCTACGTCATCCTGTCTGAAATGTATGGTCGCCTTAAGAAATGGGAAGAGAAAGCTAGTCTAACGAGGTTGATGCGGGAAAGAGGGGTTAAAAAGGTTCCAGGGTGGAGTTGGATAGAGATTGACAATGAATCTCATTCCTTTATTGCGGAAGATGCTTCTCACTCAAAATGCAGAGAGATTTATGAGGCCCTGGAGGGACTTATGGAGGAAATGAGAATGCTAAAAGATGCATCTAATGTGAAGGTTTCTATTCATGGCTGGCCACTCACTGATGGATGCTGTGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_160892.p1 GENE.R_Transcript_160892~~R_Transcript_160892.p1 ORF type:complete len:704 (+),score=139.22,PPR_2|PF13041.2|0.00034,PPR_2|PF13041.2|2.5e-09,PPR_2|PF13041.2|0.94,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|7e-08,PPR_2|PF13041.2|38,PPR_2|PF13041.2|2.1e-09,PPR_2|PF13041.2|3.3e+03,PPR_2|PF13041.2|1.7e-07,PPR_2|PF13041.2|27,PPR_2|PF13041.2|5e+03,PPR_2|PF13041.2|2.5e+03,PPR|PF01535.16|0.00014,PPR|PF01535.16|0.00013,PPR|PF01535.16|9.6,PPR|PF01535.16|0.39,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|0.028,PPR|PF01535.16|0.36,PPR|PF01535.16|4.9e+02,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|1.3e+04,PPR|PF01535.16|8.4e-06,PPR|PF01535.16|2.4,PPR|PF01535.16|4.7e-05,PPR|PF01535.16|0.36,PPR|PF01535.16|0.22,PPR|PF01535.16|6.5e+02,PPR|PF01535.16|56,PPR|PF01535.16|8.6e+03,PPR_3|PF13812.2|0.37,PPR_3|PF13812.2|0.29,PPR_3|PF13812.2|3.5e+03,PPR_3|PF13812.2|62,PPR_3|PF13812.2|9e-05,PPR_3|PF13812.2|0.67,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|3.2e+02,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|9.7e+03,PPR_3|PF13812.2|73,PPR_3|PF13812.2|44,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|0.6,PPR_3|PF13812.2|8.1,PPR_3|PF13812.2|1e+04,PPR_1|PF12854.3|0.002,PPR_1|PF12854.3|0.73,PPR_1|PF12854.3|12,PPR_1|PF12854.3|0.22,PPR_1|PF12854.3|0.0021,PPR_1|PF12854.3|11,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|0.015,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|0.1 R_Transcript_160892:245-2356(+)
MRSLKSALRSSIYEVSIIHCRALKLGIIRDIYTANNIITGYARCGQLGIAHQLFDEMRQRDTVSWNSVISGYVNSGNFGPSWGLLNDMRKAGFLVDGYTFGSLLKGIALNGEIDCGEQLHSMIIKLGCQSNVYTGSALLDMYHKCGRIDDALMAFKTMPVSNSVCWNAMIAGFVEQGEFDTAFELLGSMEREGVMIEDGTLAPFLTLLNGAEYFKLTMQLHGKIIKNGLVCCNNVCNALITSYSECGSLENAEKVFYEAVDVHDSVTWNSMLGSYLLHHEEGLALQLFVNMQLIGYEPDIYTYTSVVSACFEESYQLHGKCFHSLIIKRGLERSTPISNALIAMYLKSSGKSMVDALRLFESIDPKDSVSWNSVLKGFSQFGLSEDAVKFFGDMRSHDVGIDHYSFSAVLRSCADLAALQLGRQVHALALKSDLQSNEHVASSLVWMYSKCGLLDRARSAFEETPKDSPITWNFIIFGYAQHGQGKIALELFHQMTGCKVKLDHITFVAVLTACSHMGWVEEGRRILEIMESDYGISPRMEHYACAIDLFGRAGLLDEAKALVKSMPFEPDAMVLKTLLGACRSCGDVELASQVANQLLEIEPEEHCTYVILSEMYGRLKKWEEKASLTRLMRERGVKKVPGWSWIEIDNESHSFIAEDASHSKCREIYEALEGLMEEMRMLKDASNVKVSIHGWPLTDGCCD*

Click here to download the sequence:
Link to NCBI Protein BLAST