Transcript Information: R_Transcript_161920.p1


Annotated TAIR IDAT3G57660.1
Annotated Gene Namenuclear RNA polymerase A1
Annotated Gene Symbol(s)NRPA1
Annotation TypeHomolog
Chromosome Positionchr3:21353746-21362814 | Forward length=1670
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1593904700895
Replicate 20.82016798501164
Replicate 31.9174166514636
Condition 2: 8 Hour
Replicate 11.6123504820173
Replicate 22.1212890139518
Replicate 32.3702437975282
Condition 3: 24 Hour
Replicate 13.3053092995244
Replicate 22.2399872310743
Replicate 33.981803419603


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_161920.p1 GENE.R_Transcript_161920~~R_Transcript_161920.p1 ORF type:internal len:896 (+),score=162.71,RNA_pol_Rpb1_2|PF00623.16|1.1e-57,RNA_pol_Rpb1_1|PF04997.8|1.2e-33,RNA_pol_Rpb1_1|PF04997.8|1.1e+03,RNA_pol_Rpb1_3|PF04983.14|1.2e-29 R_Transcript_161920:2-2686(+)
CAAGTGCTGAATATGGCGCAGACAGCTGAGCTGGCGACGGAGACGGTGGAGGCGGTTCGGTTTGGGATTATGACGGACGAGGAAGTGAGGAAGCTGAGCTTTCGGCAAATTACAAACCCTAATATCTTGGATACTCTTGGAAGGCCTGAGCATGGTGGTCTTTATGATCCTGCATTAGGTCCACTGGATGATATCCAGCCTTGTAAATCATGTGGTCAACGCTCTTTGTATTGCCCTGGACATTGTGGTCATATAAATCTTGTTTCAATAGTCTACCACCCTTTGCTCTTCAACATGCTTTATAGTCTTCTACAGAATACCTGCTTCTATTGCTTCCATTTTAGGTCAGAGCCGGCTGAGGTGAAGCTTTGTCTCTCTAAATTGAATAGCATAATGAAGGGCGACATTGTTGGAGCCAGAAGTTTAGGAATAAATAATTCTCTTTTAGAGGGACTTGGTGAATCGAAGCATGTGGATCCACGGGACTGGACTTCTTTTCAGCTTAGTGAAGCATTCTCTGTGTTGAATGGTTTCTTGAAGAAAAAAAATAAGAAATGTAGCATCTGTGATCAGAGGAATCCTGCCATCTCGAAACCTACCTTTGGTTGGATCCATATGAAAGGCTTGAGCGCTAATGATGTAAAAGCAAATCTTATCAAAAGTTGCAAGTTGGATGGTCTAGTTACTAATGGAGATGACGATGATGATAATGCTGCATCAGATGTTGAAAATCCCACATGCGAAAATGGTGGTAATGCAGATGGTTCATCTGCGTTTTCACCTACTACACGAGAATCAAAGAAGCAACAGATGAATAGGATGAAATCTGAGTATTTGAAGCAGACAAAAGCACGAGATCTCTTGCCTTCAGAAGTCAAACGGATATTAGAGATGTTATGGAAAAATGAGGCTGATATATGCTCCTTTGTATGTGATATTCAGCAACATCATGGATATGAATCTAAGAATAATGCAGGTTACTTGATGTTCTTTCTAAAGACTGTTCTTGTGCCTCCAACCAAGTTCCGTCCCCCTTCTAAAGGAGGCGAATCAGTTATGGAGCATCCTCAAACTGTTCTATTGAACAATGTTCTGAATGCTAATATATCTCTTGGAAATGTGTATGAACATCACGCTGAGCATACAAATATTATTCGTAGCTGGCGGTATCTTCAACAGTGTATAAATGTTTTGTTTGATAGCAAGAGTGCAGCAGGCCAACGAGATGTAGCTACTGGAATATGTCAATTACTGGAGAAAAAGGAGGGCATGTTTCGGCAGAAGATGATGGGGAAGCGAGTGAATTTTGCTTGTCGTTCTGTGATATCACCAGATCCTTATCTCGCTGTCAATGAGATTGGGATCCCCCCTGTTTTTTCGTTAAAGTTAACATACCCTGAGAGAGTGACTCCTTGGAACGTGACAAGTTTAAGGGATGCCATTGTTAATGGCCCTGACATTCACCCTGGAGCTACACACTATGTTGATAAACAATCTACTATAAGATTGCCGGCAAACAAAAAATTGCGTATTTCTGCCTCGAGAAAGTTACCTTCTTCAAGAGGTGTTGCGACACAATCTGGGAAGAGTTTCAACTATGAATATGAAGGGAAAGTTGTACACCGTCATTTGCGCAATGGGGACATTGTGCTGGTCAATCGCCAGCCTACACTTCACAAACCAAGTATAATCGCACTTAAGGTTCGTGTCTTGCCTGGAGAGAAAACAATCCGCTTCCATTATGCAAACTGCGATTCCTTCAATGCTGATTTTGATGGGGATGAAATAAATGTTCATTTTCCACAAGACGACATATCACGAGCTGAAGCATACAACATTGTAAATGCTGATAATCAGTATATTGTTCCAACACGTGGTGATCCAAAAAGAGCCTTAATTCAGGATCACATTGTAAGCGCCGTACTCCTTACGAAGAGAGATACGTTTCTTACTTGGGATGAATTCAATGAGCTCCTTTATGCATCTGGTGTATGTTCCTTTGGTGCACCTTCTTTCAACGCTAAATCCGGCAAGAAATTATCTGTGGTGGATTCAGAAGATATCATTCTTGCCCATCCTCCAGCTATTATTAGACCACAGAGACTTTGGACTGGAAAGCAGGTCATAACTGCCATTCTAAATCACATAACCAGAGGGTGTTTGCCGTTTACTGTTAAGAAACGTGGTAAAATTGCCCGGGAGTATTTTGGGAAGGATGAATCTAAGAAGACCAATGCTGACTGTTCTAAGAAATTTGATAAAATTTCTGAAAAGAAATTTGATAAAATTTCTGAAAAGAAATTTGATAAAATTTCTGAAAAGAAATTTGATAAAATTTCTGAAAAGAAATTGAAGAGGAATCAAGCCTCTAAGAAGACAGATGATAAGATTACAGAGAGGAGATTGCAGGGTAGTCCTGTTCACAGCATTGATGAAGATGTTGTACTTGTATACAAGAATGAACTTGTCCAAGGGGTAATTGACAAGGAGCAATTCGGCAAGTATGGTTTGGTTCACACTGTGCAGGAGATGTATGGGGCAAACGCTGCAGGAAGCTTACTTTCTGTCCTAAGTCGAGTATTGACTGCTTTTTTGCAGATGCATGGCTTTACTTGTGGAGTTGATGATCTTCTTCTAGCGCAACCATATGACAAGCAGAGAAAAGAACTGCTTGAAGTTTGCCTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_161920.p1 GENE.R_Transcript_161920~~R_Transcript_161920.p1 ORF type:internal len:896 (+),score=162.71,RNA_pol_Rpb1_2|PF00623.16|1.1e-57,RNA_pol_Rpb1_1|PF04997.8|1.2e-33,RNA_pol_Rpb1_1|PF04997.8|1.1e+03,RNA_pol_Rpb1_3|PF04983.14|1.2e-29 R_Transcript_161920:2-2686(+)
QVLNMAQTAELATETVEAVRFGIMTDEEVRKLSFRQITNPNILDTLGRPEHGGLYDPALGPLDDIQPCKSCGQRSLYCPGHCGHINLVSIVYHPLLFNMLYSLLQNTCFYCFHFRSEPAEVKLCLSKLNSIMKGDIVGARSLGINNSLLEGLGESKHVDPRDWTSFQLSEAFSVLNGFLKKKNKKCSICDQRNPAISKPTFGWIHMKGLSANDVKANLIKSCKLDGLVTNGDDDDDNAASDVENPTCENGGNADGSSAFSPTTRESKKQQMNRMKSEYLKQTKARDLLPSEVKRILEMLWKNEADICSFVCDIQQHHGYESKNNAGYLMFFLKTVLVPPTKFRPPSKGGESVMEHPQTVLLNNVLNANISLGNVYEHHAEHTNIIRSWRYLQQCINVLFDSKSAAGQRDVATGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPVFSLKLTYPERVTPWNVTSLRDAIVNGPDIHPGATHYVDKQSTIRLPANKKLRISASRKLPSSRGVATQSGKSFNYEYEGKVVHRHLRNGDIVLVNRQPTLHKPSIIALKVRVLPGEKTIRFHYANCDSFNADFDGDEINVHFPQDDISRAEAYNIVNADNQYIVPTRGDPKRALIQDHIVSAVLLTKRDTFLTWDEFNELLYASGVCSFGAPSFNAKSGKKLSVVDSEDIILAHPPAIIRPQRLWTGKQVITAILNHITRGCLPFTVKKRGKIAREYFGKDESKKTNADCSKKFDKISEKKFDKISEKKFDKISEKKFDKISEKKLKRNQASKKTDDKITERRLQGSPVHSIDEDVVLVYKNELVQGVIDKEQFGKYGLVHTVQEMYGANAAGSLLSVLSRVLTAFLQMHGFTCGVDDLLLAQPYDKQRKELLEVCL

Click here to download the sequence:
Link to NCBI Protein BLAST