Transcript Information: R_Transcript_162049.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value7E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8720985594583
Replicate 21.4805083626877
Replicate 33.3772754148173
Condition 2: 8 Hour
Replicate 10.94176403643251
Replicate 24.1568305986819
Replicate 32.4434860450521
Condition 3: 24 Hour
Replicate 12.2074814642023
Replicate 21.1310389174655
Replicate 31.4030579927498


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_162049.p1 GENE.R_Transcript_162049~~R_Transcript_162049.p1 ORF type:complete len:156 (+),score=25.01,DDE_Tnp_4|PF13359.2|1.3e-10,DDE_Tnp_4|PF13359.2|2.9e+03 R_Transcript_162049:1532-1999(+)
ATGCTAGATCCAAACATGAAAGGGTTCCTTGCTCCTTTTAAGGGAAAAACGATTCGTTATCATCTTCCGGAATTTAAACGCTCAAGCCAACCTCCAACTGGATATCATGAAGCCTTTAATTTTGCTCATGCATCGCTTCCTAATGTTATTGAACGGGCATTTGGAGTATGGAAAAATAGGTGGAGTATATTGTTTAAGATGCCAAGTTACAAATTCTCTACGCAATGCAAAATTGTGGCAACTACTATGGCTCTACATAATTTTATTATAAAGTATGCAATTAATGATGAAGAGTTTGACAAGTGTGATGATGACCCCAATTACATGCCCTTGCATGTAGATGGTGAACATGAAGAAGAGGAAAGCAACAGAGATGATAGTTCATATGAGCATAGTGGAGCATTGGATGATCGTGATATGGCTACTGTTCGTAATACAATTGTTAAATCTTTAATGCATGGAAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_162049.p1 GENE.R_Transcript_162049~~R_Transcript_162049.p1 ORF type:complete len:156 (+),score=25.01,DDE_Tnp_4|PF13359.2|1.3e-10,DDE_Tnp_4|PF13359.2|2.9e+03 R_Transcript_162049:1532-1999(+)
MLDPNMKGFLAPFKGKTIRYHLPEFKRSSQPPTGYHEAFNFAHASLPNVIERAFGVWKNRWSILFKMPSYKFSTQCKIVATTMALHNFIIKYAINDEEFDKCDDDPNYMPLHVDGEHEEEESNRDDSSYEHSGALDDRDMATVRNTIVKSLMHGK*

Click here to download the sequence:
Link to NCBI Protein BLAST