Transcript Information: R_Transcript_162054.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value2E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4990354407257
Replicate 21.8257652535911
Replicate 31.9918902257524
Condition 2: 8 Hour
Replicate 11.3011812290807
Replicate 22.7005895943461
Replicate 31.7537788039021
Condition 3: 24 Hour
Replicate 11.1090728129326
Replicate 20.4261885775957
Replicate 33.0663934102417


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_162054.p1 GENE.R_Transcript_162054~~R_Transcript_162054.p1 ORF type:complete len:207 (+),score=35.02,DDE_Tnp_4|PF13359.2|4.1e-23 R_Transcript_162054:454-1074(+)
ATGGCAATTTGTGACTTTGATATGTTGTTCACCTTTGTTCAAACTGGCTGGGAGGGTTCTGCTCATGACACACGCATTCTCACCGCTACGTTGGAAAAGTTTAAAGGCAAGGAGATATTTTCATATGCTCCTGAAGGAAAGTATTATCTTACGGATGCTAGGTATCCAAACATGAAAGTGTTTCTTGCTCCTTTTAAGGGAAAAACACTTCGCTATCATCTTCTAGACTTTAAACGATCAAGCCAACCTCCAACTAGATATCATGAAGTCCTTAATTTTGCTCATGCATCGCTTCCTAATGTTATTGAACGGGCATTTGGAGTATGGAAAAATAGGTGGAGTATATTGTTTAAGATGCCAAGTTACAAATTCTCTACACAATGCAAAATTGTGGCAGCTACTATGGCTCTACACAATTTTATCAAAAAGTATACAATTAATGATGAAGAGTTTGACAAGTGTGATGAAGACCCCAATTACATGCCCCATGTAGATGGTGAACATGAAGAAGAGGAAAGCAACAGAGATGATAGTTCATATGAGCATAGTGGAGCATTGGATGATCGTGATATGGCTACTGTTCGTAATACAATTGTTAAATCTTTAATGCATGGAAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_162054.p1 GENE.R_Transcript_162054~~R_Transcript_162054.p1 ORF type:complete len:207 (+),score=35.02,DDE_Tnp_4|PF13359.2|4.1e-23 R_Transcript_162054:454-1074(+)
MAICDFDMLFTFVQTGWEGSAHDTRILTATLEKFKGKEIFSYAPEGKYYLTDARYPNMKVFLAPFKGKTLRYHLLDFKRSSQPPTRYHEVLNFAHASLPNVIERAFGVWKNRWSILFKMPSYKFSTQCKIVAATMALHNFIKKYTINDEEFDKCDEDPNYMPHVDGEHEEEESNRDDSSYEHSGALDDRDMATVRNTIVKSLMHGK*

Click here to download the sequence:
Link to NCBI Protein BLAST