Transcript Information: R_Transcript_162102.p1


Annotated TAIR IDAT5G04780.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1384540-1386447 | Forward length=635
E-Value4.7E-215
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.30421601591198
Replicate 20.23329222684776
Replicate 30.2120994221866
Condition 2: 8 Hour
Replicate 10.544130332161
Replicate 20.24845424267984
Replicate 30.33614093741457
Condition 3: 24 Hour
Replicate 10.80777469875255
Replicate 20.73517529635258
Replicate 30.40532786457217


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_162102.p1 GENE.R_Transcript_162102~~R_Transcript_162102.p1 ORF type:complete len:540 (+),score=111.17,PPR|PF01535.16|4.2e+03,PPR|PF01535.16|3.7e-06,PPR|PF01535.16|7.5e-08,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.19,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|0.15,PPR|PF01535.16|3.3e-09,PPR|PF01535.16|0.45,PPR|PF01535.16|0.99,PPR|PF01535.16|2.2e+02,PPR|PF01535.16|9e+03,PPR|PF01535.16|1.8e+02,PPR_2|PF13041.2|4e-06,PPR_2|PF13041.2|4.8e-08,PPR_2|PF13041.2|6.3e+02,PPR_2|PF13041.2|6.4e-07,PPR_2|PF13041.2|0.062,PPR_2|PF13041.2|3.8e-14,PPR_2|PF13041.2|23,PPR_2|PF13041.2|8.9e+02,PPR_1|PF12854.3|1.7e-05,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|3.3e+03,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|5.8,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|4.7,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|1.6e+03,PPR_3|PF13812.2|0.3,PPR_3|PF13812.2|0.0011,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|8.4e+02,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|7.7e+03,PPR_3|PF13812.2|45,PPR_3|PF13812.2|0.41,PPR_3|PF13812.2|8.4,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|7.7e+02,PPR_3|PF13812.2|5.4e+02,DYW_deaminase|PF14432.2|2.9e+03,DYW_deaminase|PF14432.2|1.1e-11 R_Transcript_162102:151-1770(+)
ATGCTTTCATTTTTGCAAAATCTGTTGCAATATTGTGCAAGAAACAGTTTATTTATCGAAGGCAAGGCATGTCACGCTCAAATAGTTCGAGCTGGCTTATGGGATGACCCTGTGACAGCCAATATGCTCATCAACATGTACTGTAAATGCGGCCTTTCGGAGACTGCTCATCAGGTGTTCGACAAAATGCCTGAACGAAGCTTGATTTCTTGGAACACAATGATTGGGGCGTGTGCCCAGAACGGGCAGGAGGATGCAGCTCTTTCCCTTTTTGTCGAAATGCAAAGAGAGAGGTCCTCTTTGAGTGAATTCACCCTTTCAAGCGTCCTTTGTGCTTGTGCTGCGAAATCCGACATTTCTGAGTCCAAACAATTGCATGCATTTGCTGTAAAAAAGGCAATGGACTCTAATATGTATGTCGGAACAGCATTGCTCGATGTTTACTCAAAATGCAATTTTATGAGGGAAGCATCATGGGTTTTTGATGGATTAGAGGAGAAGAGTGATGTAACATGGAGCTCTATGGTTGCAGGTTATGTCAGAAATGAGCTCTATGAAGAGGCTCTAAGGTTGTACCGTAGAGGACAAGCTCTTGGCTTGGAGCAAAACCCGTTTACCCTTTCTTCCATTCTTTCTGCTTGTGCAGGTTTAGCTGCTTTGAATGAAGGGAACCAAGTACATGGAATTCTATGTAAGGTTGGGTTTGGTGGACATGTTTTCGTGTCTTCTTCTCTCATCGATATGTATGCTAAATGTGGAGCCATTAGGGAAGCCTATGCTGTATTTTCTGATCGAGGAAACAAGAACATTGTTTCATGGAATGCAATGATCTCCGGGTTTTCTAGACATGGCCGATGCCTAGAAGCACTGATTCTATTTGAGAAGATGCAGCAAATGGGTTTGCTCCCAAATGAAATAACTTATCTATCAGTTTTATCTGCATGTGCTCATATGGGTTTAGTTGCAGAAGGACGGAAACATTTTGTCCTCATGGAGACAAAGCATCATGTGTTGCGTAATGTCCTTCACTACTCTTGCTTGGTTGACATTCTTGGTCGTGCTGGACTAATTGAAGATTCATATGAAGTCATACAGACTATGCCATTTGAAGCGACTGCTTCTATGTGGGGATCGCTTCTGGGCTCATGTAGAAATTTTGGGAATCTCGAATTGGCTGAGATTGCAGCTGAGCATTTGTTTGAGCTAGAACCAATCAATGGTGGAAACCACATATTGCTTTCAAACATATATGCAGCAAACAAAAAGTGGGAAAAGGTTGCTTGGTCAAGGCAGCTGCTGAAGGAGAGTGAAGCTTTGAAGGATAGAGGTAAAAGTTGGATTGAAATTAAGGACAAAGTTCATATCTTTATGTCTGGAGAAAGAGAACATTCTGAAACCACCAAGATCTATTCAAAATTGGAGGAACTACTAGAAGAGATGAAGAATTTAGGCTATAAGGTTGAGACTAAACATGACCTGCATGACGTGAATGATGGTGCAAAAGATGTGCTGTTGAGACACCACAGTGAAGCTTGCTCTTACTTTTGGGCTCATGAGTTTGCCCTCTGGTGCTCCCATAAGAATTATGAAGAACCTAAGAATTTGTGGGGATTGTCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_162102.p1 GENE.R_Transcript_162102~~R_Transcript_162102.p1 ORF type:complete len:540 (+),score=111.17,PPR|PF01535.16|4.2e+03,PPR|PF01535.16|3.7e-06,PPR|PF01535.16|7.5e-08,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.19,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|0.15,PPR|PF01535.16|3.3e-09,PPR|PF01535.16|0.45,PPR|PF01535.16|0.99,PPR|PF01535.16|2.2e+02,PPR|PF01535.16|9e+03,PPR|PF01535.16|1.8e+02,PPR_2|PF13041.2|4e-06,PPR_2|PF13041.2|4.8e-08,PPR_2|PF13041.2|6.3e+02,PPR_2|PF13041.2|6.4e-07,PPR_2|PF13041.2|0.062,PPR_2|PF13041.2|3.8e-14,PPR_2|PF13041.2|23,PPR_2|PF13041.2|8.9e+02,PPR_1|PF12854.3|1.7e-05,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|3.3e+03,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|5.8,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|4.7,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|1.6e+03,PPR_3|PF13812.2|0.3,PPR_3|PF13812.2|0.0011,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|8.4e+02,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|7.7e+03,PPR_3|PF13812.2|45,PPR_3|PF13812.2|0.41,PPR_3|PF13812.2|8.4,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|7.7e+02,PPR_3|PF13812.2|5.4e+02,DYW_deaminase|PF14432.2|2.9e+03,DYW_deaminase|PF14432.2|1.1e-11 R_Transcript_162102:151-1770(+)
MLSFLQNLLQYCARNSLFIEGKACHAQIVRAGLWDDPVTANMLINMYCKCGLSETAHQVFDKMPERSLISWNTMIGACAQNGQEDAALSLFVEMQRERSSLSEFTLSSVLCACAAKSDISESKQLHAFAVKKAMDSNMYVGTALLDVYSKCNFMREASWVFDGLEEKSDVTWSSMVAGYVRNELYEEALRLYRRGQALGLEQNPFTLSSILSACAGLAALNEGNQVHGILCKVGFGGHVFVSSSLIDMYAKCGAIREAYAVFSDRGNKNIVSWNAMISGFSRHGRCLEALILFEKMQQMGLLPNEITYLSVLSACAHMGLVAEGRKHFVLMETKHHVLRNVLHYSCLVDILGRAGLIEDSYEVIQTMPFEATASMWGSLLGSCRNFGNLELAEIAAEHLFELEPINGGNHILLSNIYAANKKWEKVAWSRQLLKESEALKDRGKSWIEIKDKVHIFMSGEREHSETTKIYSKLEELLEEMKNLGYKVETKHDLHDVNDGAKDVLLRHHSEACSYFWAHEFALWCSHKNYEEPKNLWGLS*

Click here to download the sequence:
Link to NCBI Protein BLAST