Transcript Information: R_Transcript_16213.p1


Annotated TAIR IDAT1G50120.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:18562302-18566015 | Forward length=532
E-Value1.2E-209
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.767476659452
Replicate 27.0756763307671
Replicate 39.4815434006052
Condition 2: 8 Hour
Replicate 18.7001058603765
Replicate 213.064324738715
Replicate 314.793895102696
Condition 3: 24 Hour
Replicate 113.413077849153
Replicate 210.462109986556
Replicate 311.82577451032


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_16213.p1 GENE.R_Transcript_16213~~R_Transcript_16213.p1 ORF type:complete len:546 (+),score=111.90,Rgp1|PF08737.6|6.5,Rgp1|PF08737.6|5.6e-22 R_Transcript_16213:184-1821(+)
ATGCCACCACCTGAAAATCTAAGCAGAAGATTTTCATTCTTCGGGTTCGGTGATTCAAGCAGCAGTAAAGTAGATTCAAGAACCTCATCTTCAATCATCAACAACGATCAACAAGAATTGGTGCCAATTTTGAAGCTTCAAACTGATAAAAATGTGTACAGGCCTGGCGACGAGGTTTCGGTGATCATTGAGATTCAAAGCCCTCGCGATCCTACCGAATCGAATCGGAATGAGATTAGGAGCAGCTCAGAGCGTTCTCTTTTGGTCGAGAAACTCAGTTTCGAGCTCAAAGGTGTTGAGAAACTTGATTCTCAATGGTTCTCCACTCCCAAACCCTTGCCTGGAGTTAAACATCGTCGAGGCGAGCATGTTTTCTTGGATTCTTCTACAACATCATTAGTTTCAAATCAAATCATTTCATCAGGGGCCACAAAGAAGTATGTGGTTCGTACAGTTTTGCCCAGTGTTATTCCACCTTCATACAGGGGTACAACCATTCGATACTTGTACTATGTTAGAATTGCTTTATCGGGACAATGGTTGATATTGGAAAATGGCCATTCCGATAGAGATGTAGTAAAAAATGTTACTGGTGTGGAAGCTCGTGTTCCCTTGCAAATATGGGTTACCCAAAGGGGAAGTGGATTATTGAATGAAGAAAGTCAAGCTGATGGGATTGTTTCTAACCAGACCATCCAAACAGATATTTATTGGAAAGAGATGTACAGGGATTCAGAATGGGCTAGGGCTAATGAAATATACGATGGAGCTGAGGAAGGTTATGACAGCTCAAGGGATGAAATTTCGTCTGTTTCCTCATATAATCCCTCAAGAGAGAGTATTCACAAGGCTTTTGGAAGCTCATCATCTCTCCACAGATCAGCATCAAGATCTTTTAGAGAGCCCTTGCATGCAGAAGCTGATGAAGTTCTGCACAATGCAAGTGGGGATATTTTATCATCCAACAGTCATCCAGCTGTATTCTCACCAAGCCAGCAAAAAAGATTGTCAAAATCATTTTCCAAAGATCGTGATGGAAAGGAAGTGTCTTCTCCATTGGAGCCTGCAGAATCTGTTGCATCAGAAGGCTATATTCGAGGCAGGTCTTATAACATTAAGCTTGACGATCAAGTTCTCCTTAGATTCTCTCCAAGGAAGTCAGACTCAAGTTACTACTTCAGTGATATGATAGGTGGGACCCTTACTTTCTTTCATGAAGAAGGAACAAGGAGGTGCCTTGAGGTTTCAGTTACCTTAGAGATCTTGGAGACTATAAATCGACGTTTTGTTCACCCATCTCGTAGGAATGCCCCCACAATAACAAAGGTTCACAGTGATCATCATGAGGTTGTTGCTGATATAGTGCAAACAAGCTTTCTCTTCTCTATCCCCATGGATGGGCCAATGTCTTTTTCAACTCCCCATGTATCTGTTCAATGGGCTCTGCGGTTTGAATTTTTCACCACTCCAAAGAATGTTGACTACAGCAGGTATGATCATCTGCTTCTTGTAGAGGGAAGAGACAAATGTGAGTGGTCTCTTCCAATTACCGTGCATGCACCTCAGCCGGGACCTGCAGCTGCCCATGCAAGAAGTAGAAAGAACCTCTCATATGAGTCCTTTTGGGTTCGTGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_16213.p1 GENE.R_Transcript_16213~~R_Transcript_16213.p1 ORF type:complete len:546 (+),score=111.90,Rgp1|PF08737.6|6.5,Rgp1|PF08737.6|5.6e-22 R_Transcript_16213:184-1821(+)
MPPPENLSRRFSFFGFGDSSSSKVDSRTSSSIINNDQQELVPILKLQTDKNVYRPGDEVSVIIEIQSPRDPTESNRNEIRSSSERSLLVEKLSFELKGVEKLDSQWFSTPKPLPGVKHRRGEHVFLDSSTTSLVSNQIISSGATKKYVVRTVLPSVIPPSYRGTTIRYLYYVRIALSGQWLILENGHSDRDVVKNVTGVEARVPLQIWVTQRGSGLLNEESQADGIVSNQTIQTDIYWKEMYRDSEWARANEIYDGAEEGYDSSRDEISSVSSYNPSRESIHKAFGSSSSLHRSASRSFREPLHAEADEVLHNASGDILSSNSHPAVFSPSQQKRLSKSFSKDRDGKEVSSPLEPAESVASEGYIRGRSYNIKLDDQVLLRFSPRKSDSSYYFSDMIGGTLTFFHEEGTRRCLEVSVTLEILETINRRFVHPSRRNAPTITKVHSDHHEVVADIVQTSFLFSIPMDGPMSFSTPHVSVQWALRFEFFTTPKNVDYSRYDHLLLVEGRDKCEWSLPITVHAPQPGPAAAHARSRKNLSYESFWVRD*

Click here to download the sequence:
Link to NCBI Protein BLAST