Transcript Information: R_Transcript_162137.p1


Annotated TAIR IDAT3G16890.1
Annotated Gene Namepentatricopeptide (PPR) domain protein 40
Annotated Gene Symbol(s)PPR40
Annotation TypeHomolog
Chromosome Positionchr3:5768401-5770380 | Reverse length=659
E-Value3E-35
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3037829253371
Replicate 20.81803767855707
Replicate 30.44623514797699
Condition 2: 8 Hour
Replicate 12.0669885994428
Replicate 21.8876069086715
Replicate 32.2394844271906
Condition 3: 24 Hour
Replicate 10.8944600218586
Replicate 20.85929580093158
Replicate 31.4212795251232


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_162137.p1 GENE.R_Transcript_162137~~R_Transcript_162137.p1 ORF type:5prime_partial len:154 (+),score=14.59 R_Transcript_162137:2-463(+)
TCTCTTTCTCAAATTCTGCTTAGAAAGGACTGGCATTTGCTGCTTAATCACGAGTTAAAAGCTGGTAGGTTTGTTCTGAACCCGCAATCTGTAGTGAGTATTTTGCAAAACCAAGAAAACCCATTGCATACTATTAGATTTTATGTCTGGGTTTTGAATATTGAGCCATTATATGCAAGGAATCAGCAAATTAGGGGTGTTCTTGCTAATACCCTTCATAGAAAAGGTCCGGTTTTGTTGTCTGTTGAATTGGTTAAGGATGTTAGGAGTTGTGGGTATGAGATTACTGAGGATTTCCTTTGCATTTTGTTTTGTAGTTGGTGTAGATTAGGACTAGCTAGTATTGTGTTGAGATTTTCTGGGCAAATTTCTTTCTTCTCTTGCTTAATTGCGAATTCTTTGCTCGCGAAATGGCGTATCTGGGAATGGTTAAGCTGGAGAATATGTGTGCCTTATCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_162137.p1 GENE.R_Transcript_162137~~R_Transcript_162137.p1 ORF type:5prime_partial len:154 (+),score=14.59 R_Transcript_162137:2-463(+)
SLSQILLRKDWHLLLNHELKAGRFVLNPQSVVSILQNQENPLHTIRFYVWVLNIEPLYARNQQIRGVLANTLHRKGPVLLSVELVKDVRSCGYEITEDFLCILFCSWCRLGLASIVLRFSGQISFFSCLIANSLLAKWRIWEWLSWRICVPYL*

Click here to download the sequence:
Link to NCBI Protein BLAST