Transcript Information: R_Transcript_162519.p1


Annotated TAIR IDAT5G08510.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:2753099-2754731 | Forward length=511
E-Value6E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.27551639176934
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.25314205857946
Replicate 30.47947650695362
Condition 3: 24 Hour
Replicate 10
Replicate 20.33290956815966
Replicate 30.49557067215617


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_162519.p1 GENE.R_Transcript_162519~~R_Transcript_162519.p1 ORF type:complete len:265 (+),score=40.95,PPR|PF01535.16|0.14,PPR|PF01535.16|3.9e-09,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|7.3e-05,PPR|PF01535.16|0.0006,PPR_2|PF13041.2|2.4,PPR_2|PF13041.2|2.2,PPR_2|PF13041.2|8.4e-07,PPR_2|PF13041.2|6.5e-10,PPR_2|PF13041.2|0.00018,PPR_2|PF13041.2|0.012,PPR_1|PF12854.3|5.8e+02,PPR_1|PF12854.3|0.13,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|0.0089,PPR_1|PF12854.3|47,PPR_1|PF12854.3|0.0038,PPR_1|PF12854.3|0.29,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|5.6,PPR_3|PF13812.2|0.00032,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|1.3e+04,PPR_3|PF13812.2|0.0051,PPR_3|PF13812.2|1.3e+02 R_Transcript_162519:323-1117(+)
ATGCTTCAACAGCGTTGTTTTCCTAACCCTCTCACTTTCACCTTCCTTTTTGCCGCTTGCGCTTCCCTTTTCTCCCCTAGCCTTGGTAGGATGCTTCATGCCCATTACACTAAATCCGGGTTTCAATTTGATGTTTTTGCATTGACTGCTTTGGTCGATATGTATGCCAAGTTGGGTTTGTTGGATTCAGCTCGGAAGCAATTTGATAGGATACAATTGAAAGATACACCCACATGGAATTCCATTATTGCTGGGTATGTTAGGAGTGGAAATATGGAGGAAGCCAAGAAATTGTTTCAGTTAATGCCATCTAAGAATGTGGTTTCTTGGACAACTATGATAGCTGGCTATTCACAAAATGGGCAATATGTGAATGCCCTCAACATGTTTTTGTTGATGGAGCAGGACCAAGGATTGAAGCCCAATGAGGTAACTTTGGCTAGCATCCTACCAGCTTGTGCAAATCTTGGTGCATTGGAGGTAGGAGAGAGGATCGGAGAGTATGCTAGGCGAAACGGGTACATGAGTAACTTGTTTGTCAGCAATGCCTTACTGGAAATGTATGCAAAGTGTGGGAAACTCGATTTAGCAATGCAGTTGTTCAATGAGATGGGTTGTAGGAAGAACTTGTGCTCTTGGAACTCAATGATGATGGGCTTGGCTATACATGGGAAATCCGGACAAGCTCTTTTGCTGTTCCATCACATGCTGGTATGTTTTCTGTTTCGTCTTGGATTTTCATTATCTTGTCAAAGGTGTCCCATTTTCTTAGTAGAATTCAGGTTTGAGTATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_162519.p1 GENE.R_Transcript_162519~~R_Transcript_162519.p1 ORF type:complete len:265 (+),score=40.95,PPR|PF01535.16|0.14,PPR|PF01535.16|3.9e-09,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|7.3e-05,PPR|PF01535.16|0.0006,PPR_2|PF13041.2|2.4,PPR_2|PF13041.2|2.2,PPR_2|PF13041.2|8.4e-07,PPR_2|PF13041.2|6.5e-10,PPR_2|PF13041.2|0.00018,PPR_2|PF13041.2|0.012,PPR_1|PF12854.3|5.8e+02,PPR_1|PF12854.3|0.13,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|0.0089,PPR_1|PF12854.3|47,PPR_1|PF12854.3|0.0038,PPR_1|PF12854.3|0.29,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|5.6,PPR_3|PF13812.2|0.00032,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|1.3e+04,PPR_3|PF13812.2|0.0051,PPR_3|PF13812.2|1.3e+02 R_Transcript_162519:323-1117(+)
MLQQRCFPNPLTFTFLFAACASLFSPSLGRMLHAHYTKSGFQFDVFALTALVDMYAKLGLLDSARKQFDRIQLKDTPTWNSIIAGYVRSGNMEEAKKLFQLMPSKNVVSWTTMIAGYSQNGQYVNALNMFLLMEQDQGLKPNEVTLASILPACANLGALEVGERIGEYARRNGYMSNLFVSNALLEMYAKCGKLDLAMQLFNEMGCRKNLCSWNSMMMGLAIHGKSGQALLLFHHMLVCFLFRLGFSLSCQRCPIFLVEFRFEY*

Click here to download the sequence:
Link to NCBI Protein BLAST