Transcript Information: R_Transcript_162520.p1


Annotated TAIR IDAT5G08510.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2753099-2754731 | Forward length=511
E-Value4.4E-179
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.76389043643096
Replicate 20.69371036617725
Replicate 30.80728590647233
Condition 2: 8 Hour
Replicate 10.48540260908636
Replicate 20.39402434962442
Replicate 30.5997228178542
Condition 3: 24 Hour
Replicate 10.96078928926515
Replicate 20.29147919238648
Replicate 31.2534808851527


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_162520.p1 GENE.R_Transcript_162520~~R_Transcript_162520.p1 ORF type:3prime_partial len:454 (+),score=92.52,PPR_2|PF13041.2|4.7,PPR_2|PF13041.2|4.4,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|1.4e-09,PPR_2|PF13041.2|0.00036,PPR_2|PF13041.2|7.2e-07,PPR_2|PF13041.2|5.9,PPR_2|PF13041.2|4.2,PPR_2|PF13041.2|21,PPR_2|PF13041.2|6e+02,PPR|PF01535.16|0.29,PPR|PF01535.16|8.1e-09,PPR|PF01535.16|2.5e-06,PPR|PF01535.16|0.00015,PPR|PF01535.16|6.5e-05,PPR|PF01535.16|11,PPR|PF01535.16|0.041,PPR|PF01535.16|4,PPR|PF01535.16|24,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|0.26,PPR_1|PF12854.3|4.1e-05,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|89,PPR_1|PF12854.3|0.008,PPR_1|PF12854.3|0.6,PPR_1|PF12854.3|2.6e+03,PPR_1|PF12854.3|2.6e+03,PPR_1|PF12854.3|1,PPR_1|PF12854.3|40,PPR_3|PF13812.2|11,PPR_3|PF13812.2|0.00067,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|7.3,PPR_3|PF13812.2|49,PPR_3|PF13812.2|12,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|15 R_Transcript_162520:323-1681(+)
ATGCTTCAACAGCGTTGTTTTCCTAACCCTCTCACTTTCACCTTCCTTTTTGCCGCTTGCGCTTCCCTTTTCTCCCCTAGCCTTGGTAGGATGCTTCATGCCCATTACACTAAATCCGGGTTTCAATTTGATGTTTTTGCATTGACTGCTTTGGTCGATATGTATGCCAAGTTGGGTTTGTTGGATTCAGCTCGGAAGCAATTTGATAGGATACAATTGAAAGATACACCCACATGGAATTCCATTATTGCTGGGTATGTTAGGAGTGGAAATATGGAGGAAGCCAAGAAATTGTTTCAGTTAATGCCATCTAAGAATGTGGTTTCTTGGACAACTATGATAGCTGGCTATTCACAAAATGGGCAATATGTGAATGCCCTCAACATGTTTTTGTTGATGGAGCAGGACCAAGGATTGAAGCCCAATGAGGTAACTTTGGCTAGCATCCTACCAGCTTGTGCAAATCTTGGTGCATTGGAGGTAGGAGAGAGGATCGGAGAGTATGCTAGGCGAAACGGGTACATGAGTAACTTGTTTGTCAGCAATGCCTTACTGGAAATGTATGCAAAGTGTGGGAAACTCGATTTAGCAATGCAGTTGTTCAATGAGATGGGTTGTAGGAAGAACTTGTGCTCTTGGAACTCAATGATGATGGGCTTGGCTATACATGGGAAATCCGGACAAGCTCTTTTGCTGTTCCATCACATGCTGAAAGAAGGGATGTTGCCTGATGATGTCACACTTGTTGCGGCTCTTGTTGCTTGCACACATGGTGGCATGATTACACAAGGATGGGAATTATTTGAATCAATGAAGAGCAAATTCAGTATCGCTCCCAAGCTAGAACACTATGGTTGTATGGTCGATCTCCTTGGGCGTGCAGGGAAGCTCAAAGAAGCTCATAATCTTATACAAAATATGTCAATTGAGCCTGATTCTGTGATATGGGGTACCCTTTTGGGGGCTTGCAGTTTCCATGGCAATGTTGAAGTTGCAGAAAAGGCAGCAGAGGCCCTTTTCGGGCTTGAGCCATGGAATCCTGGGAACTATGTAATTCTTTCTAATATATATGCTTCTGCTAAGAGATGGGATGGAGTTGCAAAGCTGAGAAAGACGATGAAGAGCAGCCAAATCACGAAAGGAGCTGGTTGTAGTTTTGTGGAAGACTCTGGTCAAGTTCATAAATTCATTGTAGAGGATAAATCACATCCAAGAACCAATGAGATCTATAAAGTCCTCGACAATGTGTATACCATGATGGAGAAGGATGTCATCCTACGGCAAAGCGAGATAGTGCATGAATCTGGTCGGACATCCACTGCAGAAATTTCATTCCCTGTGTTGCTTTCCTGGACCGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_162520.p1 GENE.R_Transcript_162520~~R_Transcript_162520.p1 ORF type:3prime_partial len:454 (+),score=92.52,PPR_2|PF13041.2|4.7,PPR_2|PF13041.2|4.4,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|1.4e-09,PPR_2|PF13041.2|0.00036,PPR_2|PF13041.2|7.2e-07,PPR_2|PF13041.2|5.9,PPR_2|PF13041.2|4.2,PPR_2|PF13041.2|21,PPR_2|PF13041.2|6e+02,PPR|PF01535.16|0.29,PPR|PF01535.16|8.1e-09,PPR|PF01535.16|2.5e-06,PPR|PF01535.16|0.00015,PPR|PF01535.16|6.5e-05,PPR|PF01535.16|11,PPR|PF01535.16|0.041,PPR|PF01535.16|4,PPR|PF01535.16|24,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|0.26,PPR_1|PF12854.3|4.1e-05,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|89,PPR_1|PF12854.3|0.008,PPR_1|PF12854.3|0.6,PPR_1|PF12854.3|2.6e+03,PPR_1|PF12854.3|2.6e+03,PPR_1|PF12854.3|1,PPR_1|PF12854.3|40,PPR_3|PF13812.2|11,PPR_3|PF13812.2|0.00067,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|7.3,PPR_3|PF13812.2|49,PPR_3|PF13812.2|12,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|15 R_Transcript_162520:323-1681(+)
MLQQRCFPNPLTFTFLFAACASLFSPSLGRMLHAHYTKSGFQFDVFALTALVDMYAKLGLLDSARKQFDRIQLKDTPTWNSIIAGYVRSGNMEEAKKLFQLMPSKNVVSWTTMIAGYSQNGQYVNALNMFLLMEQDQGLKPNEVTLASILPACANLGALEVGERIGEYARRNGYMSNLFVSNALLEMYAKCGKLDLAMQLFNEMGCRKNLCSWNSMMMGLAIHGKSGQALLLFHHMLKEGMLPDDVTLVAALVACTHGGMITQGWELFESMKSKFSIAPKLEHYGCMVDLLGRAGKLKEAHNLIQNMSIEPDSVIWGTLLGACSFHGNVEVAEKAAEALFGLEPWNPGNYVILSNIYASAKRWDGVAKLRKTMKSSQITKGAGCSFVEDSGQVHKFIVEDKSHPRTNEIYKVLDNVYTMMEKDVILRQSEIVHESGRTSTAEISFPVLLSWTE

Click here to download the sequence:
Link to NCBI Protein BLAST