Transcript Information: R_Transcript_163068.p1


Annotated TAIR IDAT3G49660.1
Annotated Gene NameTransducin/WD40 repeat-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:18413690-18415223 | Forward length=317
E-Value2E-175
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.937688621229
Replicate 212.263325906864
Replicate 314.527871926763
Condition 2: 8 Hour
Replicate 114.301478641754
Replicate 214.247641527127
Replicate 319.168957528314
Condition 3: 24 Hour
Replicate 120.519809999983
Replicate 218.021553724749
Replicate 321.823139186346


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_163068.p1 GENE.R_Transcript_163068~~R_Transcript_163068.p1 ORF type:complete len:339 (+),score=17.76,WD40|PF00400.28|2.9e-05,WD40|PF00400.28|1.5e-08,WD40|PF00400.28|3.1e-07,WD40|PF00400.28|3.6e-07,WD40|PF00400.28|0.0013,WD40|PF00400.28|2.5e-05,WD40|PF00400.28|9.4e-05,Nup160|PF11715.4|2.9e+02,Nup160|PF11715.4|0.15,Nup160|PF11715.4|0.022,Nup160|PF11715.4|8,Nup160|PF11715.4|0.056,WD40_like|PF17005.1|1.6e+02,WD40_like|PF17005.1|0.00056,WD40_like|PF17005.1|0.0031,WD40_like|PF17005.1|3.3,eIF2A|PF08662.7|1.5e+02,eIF2A|PF08662.7|0.0013,eIF2A|PF08662.7|0.94,eIF2A|PF08662.7|3.8,Ge1_WD40|PF16529.1|2.1,Ge1_WD40|PF16529.1|0.19,Ge1_WD40|PF16529.1|15,Ge1_WD40|PF16529.1|4.5e+02,Nucleoporin_N|PF08801.7|1e+02,Nucleoporin_N|PF08801.7|0.012,Nucleoporin_N|PF08801.7|1,PALB2_WD40|PF16756.1|6.4,PALB2_WD40|PF16756.1|13,PALB2_WD40|PF16756.1|0.35,PALB2_WD40|PF16756.1|0.43 R_Transcript_163068:100-1116(+)
ATGGCTTCCACAACCCCAGAACCCCAACCCCCATTCACCCCTTACAAGCTCAAACAAACCCTACCCGCCCACAAACGGGCAATCTCCTCCGTAAAATTCTCCCCGGACGGCAAATACCTCGCCTCCGTCTCCGCCGATAAAACCGCCCGCATCTACTCCATCCCCCAATTCTCTCTCCTCCACGAACTCACCGGCCACGACCAAGGCATCTCCGACCTGGCCTTCTCCTCCGACACCCGCCTTTTAGCCACCGCCTCCGACGACAAGTCCGTCAAAATCTGGGACGTCTCCACCGGTCACCTTATCAAAACCCTAATTGGCCACACCAACTATGTGTTCTGTGTCAATTTCAACCCCCAGTCTAATATGATCGTTTCGGGTTCGTTCGATGAGACTGTTAGGGTTTGGGATGTCAAGAGTGGGAAGTGCCTTAAGGTCCTCCCGGCCCATTCGGACCCTGTTACTGCTGTTAATTTTAATTGGGACGGGTCGTTGATCGTTTCAAGTAGCTATGATGGGTTGTGTCGGATTTGGGATGCTAATACTGGCCATTGTATGAAGACTTTGATTGATGATGAGAATCCTCCTGTTTCGTTTGTGAAGTTTTCACCTAATGGGAAGTTTATTCTTGTTGGGACATTGGATAATACTCTGAGGCTTTGGAATTTTTCTACTGGAAAGTTTCTGAAGACATATACTGGGCATGTAAATTCAAAATACTGCATTTCGACCACATTTTCCATAACAAATGGAAAGTACATCGTTAGTGGTTCCGAGGATAATTGCGTTTACTTGTGGGAGATTCAGTCAAGAAACATTGTCCAAAAATTGGAAGGTCATACTGATACCGTCATCTCAGTTGCTTGCCACCCCACTGAGAACATGATTGCATCCGGTGCCCTTGAGAATGACAAGACTATCAAGATATGGACACGAGAAAGACTAACTTGTTTCTTTGCTGGAGATTTTGGTATACTATCGCCCCTTATAAACATGAATGACAAGGACACTAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_163068.p1 GENE.R_Transcript_163068~~R_Transcript_163068.p1 ORF type:complete len:339 (+),score=17.76,WD40|PF00400.28|2.9e-05,WD40|PF00400.28|1.5e-08,WD40|PF00400.28|3.1e-07,WD40|PF00400.28|3.6e-07,WD40|PF00400.28|0.0013,WD40|PF00400.28|2.5e-05,WD40|PF00400.28|9.4e-05,Nup160|PF11715.4|2.9e+02,Nup160|PF11715.4|0.15,Nup160|PF11715.4|0.022,Nup160|PF11715.4|8,Nup160|PF11715.4|0.056,WD40_like|PF17005.1|1.6e+02,WD40_like|PF17005.1|0.00056,WD40_like|PF17005.1|0.0031,WD40_like|PF17005.1|3.3,eIF2A|PF08662.7|1.5e+02,eIF2A|PF08662.7|0.0013,eIF2A|PF08662.7|0.94,eIF2A|PF08662.7|3.8,Ge1_WD40|PF16529.1|2.1,Ge1_WD40|PF16529.1|0.19,Ge1_WD40|PF16529.1|15,Ge1_WD40|PF16529.1|4.5e+02,Nucleoporin_N|PF08801.7|1e+02,Nucleoporin_N|PF08801.7|0.012,Nucleoporin_N|PF08801.7|1,PALB2_WD40|PF16756.1|6.4,PALB2_WD40|PF16756.1|13,PALB2_WD40|PF16756.1|0.35,PALB2_WD40|PF16756.1|0.43 R_Transcript_163068:100-1116(+)
MASTTPEPQPPFTPYKLKQTLPAHKRAISSVKFSPDGKYLASVSADKTARIYSIPQFSLLHELTGHDQGISDLAFSSDTRLLATASDDKSVKIWDVSTGHLIKTLIGHTNYVFCVNFNPQSNMIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVNFNWDGSLIVSSSYDGLCRIWDANTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNFSTGKFLKTYTGHVNSKYCISTTFSITNGKYIVSGSEDNCVYLWEIQSRNIVQKLEGHTDTVISVACHPTENMIASGALENDKTIKIWTRERLTCFFAGDFGILSPLINMNDKDTR*

Click here to download the sequence:
Link to NCBI Protein BLAST