Transcript Information: R_Transcript_163355.p2


Annotated TAIR IDAT3G47070.1
Annotated Gene NameLOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:17337205-17337507 | Reverse length=100
E-Value6E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 178.971994334702
Replicate 266.631116627232
Replicate 367.084017245875
Condition 2: 8 Hour
Replicate 118.489326592818
Replicate 220.307331468016
Replicate 319.07771320306
Condition 3: 24 Hour
Replicate 144.744297760117
Replicate 232.182673687271
Replicate 338.861843015512


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_163355.p2 GENE.R_Transcript_163355~~R_Transcript_163355.p2 ORF type:complete len:98 (+),score=38.33,TSP9|PF11493.4|9.6e-26 R_Transcript_163355:2057-2350(+)
ATGGCTTCATTACCCTTGTTCAGCATGGGAGCAGCAGCTGGTGGTAGAGTATTCACAGCAAGAGCAACAAAGGGGGCAGCTGGAAGCACTGAAGAAAAGAGCTTTTTGGATTGGGTTTTAGGGAACCTAACTAAGGAGGATCAATTTTATGAAACTGATCCCATCCTTCAGAAGGTTGAAGGGAAGGCTGGCACCACCAGTGGCCGAAAGGGTGGCACCATATCAGTTCCTGCCAAGAAGAAGATTGGCGGCGGCGGTGATGGTGCTTTTGGAGGGCTTTTTGCCAAAAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_163355.p2 GENE.R_Transcript_163355~~R_Transcript_163355.p2 ORF type:complete len:98 (+),score=38.33,TSP9|PF11493.4|9.6e-26 R_Transcript_163355:2057-2350(+)
MASLPLFSMGAAAGGRVFTARATKGAAGSTEEKSFLDWVLGNLTKEDQFYETDPILQKVEGKAGTTSGRKGGTISVPAKKKIGGGGDGAFGGLFAKK*

Click here to download the sequence:
Link to NCBI Protein BLAST