Transcript Information: R_Transcript_163373.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1528185866138
Replicate 21.3260821315557
Replicate 31.3261795450404
Condition 2: 8 Hour
Replicate 10.51549189362621
Replicate 20.70613311077428
Replicate 30.85981313464991
Condition 3: 24 Hour
Replicate 10.72498338613802
Replicate 21.0447227895537
Replicate 31.6127782400872


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_163373.p1 GENE.R_Transcript_163373~~R_Transcript_163373.p1 ORF type:complete len:190 (+),score=32.93,UBN2_3|PF14244.2|8.1e-18,Retrotrans_gag|PF03732.13|3.6e-06 R_Transcript_163373:553-1122(+)
ATGTCAGTAGATCCATCCATTCGACCACTAATTGGGTATATGGACACTGCAAAGGAGTTGTGGGATGACATAAAAGCACGTTTCTCTATTGGTGATGCATTACGTATTTATCAGTTACAAGAAGCCATTACAGATTGCACACAACAAGGTCAAAGTGTGACATCTTACTTTGGCAAACTTAAGATATTGTGGGATGAGTTGCTTGGGTATTTGAAGACACCTACATGCACTTGTGGTGGTTGTAAATATGGCTGGGCCAAGGAGCTTCACAAAGAACGGGAGGAGGAGTTGCTTTATTCCTTTCTCATGGGACTTGACAACGCCGTCTTTGGCACGGTTAGGTCTAATATTTTGAGTAAGACACCACTCCCACCCCTTACTACTGCCTTTTCTAATGTTATTCAAGAAGAGCGTCATCAACAACTCATTCGTGCTAAAGAAGAAAGAATAGATGCTGTTAGCTTTGTAGTTAATGCTCTAAACATATCTGATAGCCGAAAATCAACTTTTGTGAATATGGGTGAAAGACCATTTTGCTCCTACCGTAAGAAAACAGGACATGATGCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_163373.p1 GENE.R_Transcript_163373~~R_Transcript_163373.p1 ORF type:complete len:190 (+),score=32.93,UBN2_3|PF14244.2|8.1e-18,Retrotrans_gag|PF03732.13|3.6e-06 R_Transcript_163373:553-1122(+)
MSVDPSIRPLIGYMDTAKELWDDIKARFSIGDALRIYQLQEAITDCTQQGQSVTSYFGKLKILWDELLGYLKTPTCTCGGCKYGWAKELHKEREEELLYSFLMGLDNAVFGTVRSNILSKTPLPPLTTAFSNVIQEERHQQLIRAKEERIDAVSFVVNALNISDSRKSTFVNMGERPFCSYRKKTGHDA*

Click here to download the sequence:
Link to NCBI Protein BLAST