Transcript Information: R_Transcript_164171.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value6E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.17807766785092
Replicate 20
Replicate 30.11174018339587
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.088544442050668
Condition 3: 24 Hour
Replicate 10.11198930354978
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_164171.p1 GENE.R_Transcript_164171~~R_Transcript_164171.p1 ORF type:3prime_partial len:205 (-),score=25.26,rve|PF00665.22|2.6e-07 R_Transcript_164171:1-612(-)
ATGGTCGCGCCCCGCTTCAATTCTCAACAAGTAATATTGGAGAATGTCTACCATGTACAAAGGATGAAAAAGAATCTCTTTTCAGTATCACAACTTACATCTTCTGGCAACTATGTGGTTTTTGGCCCAGATGATGTTAAGGTGTATCATAAGTTGAACCCGATTGGAGCACTACTCATGAAAGGTCGACGATTAGCTTCTATCTACTTGGCACAGGAAGCCTGTGTAGATAAGACAAGGATGAATGAGACAACAGATTTTTGGCATGTCAATTACCACATGCTACCAGTCAAGATGAAGAAGTCATCACTCAATGGTCTAACTCGGATGGACATACGAAGTGATGTAGTATGCGCTGGCTGTCAATATGGCAAAGCACATCAATTGCCATATAAGGAGTCGAAGTACCGAGCCAAGAGACCACTAGAGCTGGTACATTCAGATGTCTTTGGTCCTGTGAATCAGACATCAATAAGTGGGTATCAATACATGATTACCTTTATTGATGATTATTCAAGATATGTCTGGGTCTACTTCATGAAAGAGAAGTCAGAAGCCTTATCCAAATTCATGGCATTCAAAGATGAAGCTGAAAAGGAAGTTGGTTCCAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_164171.p1 GENE.R_Transcript_164171~~R_Transcript_164171.p1 ORF type:3prime_partial len:205 (-),score=25.26,rve|PF00665.22|2.6e-07 R_Transcript_164171:1-612(-)
MVAPRFNSQQVILENVYHVQRMKKNLFSVSQLTSSGNYVVFGPDDVKVYHKLNPIGALLMKGRRLASIYLAQEACVDKTRMNETTDFWHVNYHMLPVKMKKSSLNGLTRMDIRSDVVCAGCQYGKAHQLPYKESKYRAKRPLELVHSDVFGPVNQTSISGYQYMITFIDDYSRYVWVYFMKEKSEALSKFMAFKDEAEKEVGSK

Click here to download the sequence:
Link to NCBI Protein BLAST