Transcript Information: R_Transcript_164308.p1


Annotated TAIR IDAT5G59600.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24011315-24012919 | Reverse length=534
E-Value8.9E-192
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0371000542454
Replicate 20.64761316219101
Replicate 30.40904888564558
Condition 2: 8 Hour
Replicate 10.27824846530961
Replicate 20.79860292289948
Replicate 30.79560630965982
Condition 3: 24 Hour
Replicate 11.0062675245909
Replicate 20.78768781752062
Replicate 31.5989394657636


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_164308.p1 GENE.R_Transcript_164308~~R_Transcript_164308.p1 ORF type:5prime_partial len:616 (+),score=92.66,PPR|PF01535.16|3.2,PPR|PF01535.16|0.00035,PPR|PF01535.16|0.003,PPR|PF01535.16|0.021,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.0025,PPR|PF01535.16|5.3e-08,PPR|PF01535.16|0.18,PPR|PF01535.16|0.02,PPR|PF01535.16|23,PPR|PF01535.16|26,PPR_2|PF13041.2|7.3,PPR_2|PF13041.2|0.0061,PPR_2|PF13041.2|0.038,PPR_2|PF13041.2|0.0022,PPR_2|PF13041.2|2.7e-12,PPR_2|PF13041.2|6.7e-10,PPR_2|PF13041.2|0.3,PPR_2|PF13041.2|1.3e-06,PPR_2|PF13041.2|47,PPR_2|PF13041.2|0.69,PPR_2|PF13041.2|1e+03,PPR_2|PF13041.2|42,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|19,PPR_1|PF12854.3|2.5,PPR_1|PF12854.3|0.02,PPR_1|PF12854.3|4.9e-06,PPR_1|PF12854.3|0.00017,PPR_1|PF12854.3|9.9,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|0.02,PPR_1|PF12854.3|6.9e+03,PPR_3|PF13812.2|5e+02,PPR_3|PF13812.2|4.2,PPR_3|PF13812.2|2,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.00082,PPR_3|PF13812.2|12,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|0.53,PPR_3|PF13812.2|12,PPR_3|PF13812.2|18,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|5.1e+02 R_Transcript_164308:2-1849(+)
ATCCAAAAAAAACACAACAAAGCAAAACAAAATTTACACCAAACAAAGCAAAAACAACCAACAAACACACACAAACAACAAAAAAAAAACACGAAAGACAAAAACAGAAACCATACAACAGCAAAAAAAAAAAAAAAAAACAGCAAATGCTTTCCCGCCACAGCCAGTCAAATGCTTTCCATTATTTCCAGAAAAAATACATTCCTCAAATTCTCCTGGCAAATCAACTTTACTAGCCGTTCATTATATACATCCTCAGATAGCCGTTCATTATATACATCCTCAGATCATAAATACATCAAATGCATTGAAAAGTCTTCCCAAGATCGATCTTTGCCCCTCTTGGGCAAAGCTTTACATGCTCATTTAGTCATCAATGGCTTGGTTCGTAACACCCATTTTGCTTCCAAACTCATAGCAATGTACGTTGAATGTGGGGAACTCCATATTGCCCGCCAACTGTTCGACGAAATTCCCAAGTCAAACTATGCCCGATGGATAGTCCTTATTGGGGCTTATGCAAAATGTGGGTTCTACAGGCATGCGTTAGGCTTGTTGAGGGAAATGCTGGCAGTAGGTGTAAGACCCAATAACTATGTCCTTCCTAGTGCTCTGAAAGCTTGTAGGCATCTATCGGAATGGCAGGCTGGTAAGGAGATACATGCTTTGATCTTGAGGGGTTCGTTTCTGTTTGATGCGTATGTTGGTTGTGCTCTCATTGATATGTACTCTAAATGTGAATTGGTTGAGAATGCGAGGAGGGTTTTCGATAGCATGATTGAGAAGGACTTGGTTGCCTTAAATGCAATGATTGCTGGGTATGCTCAAGCAGGGGTGGTGAAGGAGGCTCTGGGTTTGGTAGAGAATGGTCAGTTGATGGGTTTGCGGCCTAATGTTGTAACTTGGAATACATTAATTGCTGGATTTTCGCAAGAAGGGGATCATTTAATGGTGGATGAGCTGTTTCGGTTGATGCGTGTTAATGGGATTGAGCCTGATGTGGTGTCCTGGACTTCTATCATATCCGGGCTGGTGAAGAATTTTCAGAATAGTGAAGCTTTTGTGACATTTCGCAAAATGTTGGATTCTAGGCTTTGCCCTAATGGGAATACAATTAGCTGTCTCTTGTCTGCTTGTGCTAATGTGGCCAATGTAACGCATGGGAAGGAGATACATAAGTATGCATTGGTGAATGAACTTGAGCAGGATATATATGTGAGGAGTGCTCTTATTGACATGTATGCTAAGTGTGGCTGTATATACCAAGCATCAATGTTGTTTGAGAAGATGACTAGACGGAATACTCCTACTTGGAACTCAATGATCTTTGGATATGCTAATCATGGTTTTTGTAACAAGGCAATTGAACTTTTCAAGAGGATGGAAGTTGAGGGGAGAGAGAAACTTGATCACCTGACTTTCACTGCAGCTCTAATGGCCTGTAGTCATGGTGGCATGATGGAACTTGGGAAAACCTTGTTCAAATCAATGCAAGAAACTTACAACATTAGGCCAAGACTCGAGCATTATGCATGCCTTGTGGATCTTCTTGGTCGAGCAGGAAAGTTAATGGAGGCCTATGATTTAATCAAAGAAATGCCAATAAAACCTGATTTATTTGTATGGGGGGCATTACTAGGAGCTTGTAGACAGCATGGTAACATAGAGCTTGCTGAAGTAGCAGCTAGTGAATTGTCTACGCTTGAGCCGCAGGGTGCAGGTACAAGTCTACTGTCAAATTTATATGCTGGAAGGGGAAATTGGGATAATGCTGCACGGCTGAAGAAGCTGATGAAGAAGAAGAAAATGAAAAGTTTTCAGGGTTGCAGCTGGGTAGAGGCTGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_164308.p1 GENE.R_Transcript_164308~~R_Transcript_164308.p1 ORF type:5prime_partial len:616 (+),score=92.66,PPR|PF01535.16|3.2,PPR|PF01535.16|0.00035,PPR|PF01535.16|0.003,PPR|PF01535.16|0.021,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.0025,PPR|PF01535.16|5.3e-08,PPR|PF01535.16|0.18,PPR|PF01535.16|0.02,PPR|PF01535.16|23,PPR|PF01535.16|26,PPR_2|PF13041.2|7.3,PPR_2|PF13041.2|0.0061,PPR_2|PF13041.2|0.038,PPR_2|PF13041.2|0.0022,PPR_2|PF13041.2|2.7e-12,PPR_2|PF13041.2|6.7e-10,PPR_2|PF13041.2|0.3,PPR_2|PF13041.2|1.3e-06,PPR_2|PF13041.2|47,PPR_2|PF13041.2|0.69,PPR_2|PF13041.2|1e+03,PPR_2|PF13041.2|42,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|19,PPR_1|PF12854.3|2.5,PPR_1|PF12854.3|0.02,PPR_1|PF12854.3|4.9e-06,PPR_1|PF12854.3|0.00017,PPR_1|PF12854.3|9.9,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|0.02,PPR_1|PF12854.3|6.9e+03,PPR_3|PF13812.2|5e+02,PPR_3|PF13812.2|4.2,PPR_3|PF13812.2|2,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.00082,PPR_3|PF13812.2|12,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|0.53,PPR_3|PF13812.2|12,PPR_3|PF13812.2|18,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|5.1e+02 R_Transcript_164308:2-1849(+)
IQKKHNKAKQNLHQTKQKQPTNTHKQQKKNTKDKNRNHTTAKKKKKNSKCFPATASQMLSIISRKNTFLKFSWQINFTSRSLYTSSDSRSLYTSSDHKYIKCIEKSSQDRSLPLLGKALHAHLVINGLVRNTHFASKLIAMYVECGELHIARQLFDEIPKSNYARWIVLIGAYAKCGFYRHALGLLREMLAVGVRPNNYVLPSALKACRHLSEWQAGKEIHALILRGSFLFDAYVGCALIDMYSKCELVENARRVFDSMIEKDLVALNAMIAGYAQAGVVKEALGLVENGQLMGLRPNVVTWNTLIAGFSQEGDHLMVDELFRLMRVNGIEPDVVSWTSIISGLVKNFQNSEAFVTFRKMLDSRLCPNGNTISCLLSACANVANVTHGKEIHKYALVNELEQDIYVRSALIDMYAKCGCIYQASMLFEKMTRRNTPTWNSMIFGYANHGFCNKAIELFKRMEVEGREKLDHLTFTAALMACSHGGMMELGKTLFKSMQETYNIRPRLEHYACLVDLLGRAGKLMEAYDLIKEMPIKPDLFVWGALLGACRQHGNIELAEVAASELSTLEPQGAGTSLLSNLYAGRGNWDNAARLKKLMKKKKMKSFQGCSWVEAA*

Click here to download the sequence:
Link to NCBI Protein BLAST