Transcript Information: R_Transcript_164368.p1


Annotated TAIR IDAT5G50920.1
Annotated Gene NameCLPC Homologue 1
Annotated Gene Symbol(s)CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1
Annotation TypeOrtholog
Chromosome Positionchr5:20715710-20719800 | Reverse length=929
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7216281630718
Replicate 22.0655589659036
Replicate 32.0908786852472
Condition 2: 8 Hour
Replicate 11.5893462034723
Replicate 21.5421297821507
Replicate 31.6752500673988
Condition 3: 24 Hour
Replicate 12.2818104546805
Replicate 22.2368416724723
Replicate 32.8414058822747


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_164368.p1 GENE.R_Transcript_164368~~R_Transcript_164368.p1 ORF type:complete len:986 (+),score=206.87,AAA_2|PF07724.10|1.1,AAA_2|PF07724.10|2.4e+03,AAA_2|PF07724.10|2.4e-53,Clp_N|PF02861.16|6.6e-16,Clp_N|PF02861.16|1.2e-17,ClpB_D2-small|PF10431.5|1.2e-24,AAA|PF00004.25|2.1e-15,AAA|PF00004.25|5.7e-06,AAA_5|PF07728.10|2.5e-05,AAA_5|PF07728.10|3e+03,AAA_5|PF07728.10|1.4e-11,AAA_16|PF13191.2|3.5e-05,AAA_16|PF13191.2|1.8e+02,AAA_16|PF13191.2|0.06,AAA_17|PF13207.2|0.11,AAA_17|PF13207.2|0.0001,UVR|PF02151.15|6.6e-09,Sigma54_activat|PF00158.22|0.073,Sigma54_activat|PF00158.22|0.00012,IstB_IS21|PF01695.13|0.0029,IstB_IS21|PF01695.13|1.3,AAA_18|PF13238.2|0.013,AAA_18|PF13238.2|3.2e+03,AAA_18|PF13238.2|1.1,AAA_22|PF13401.2|2e+03,AAA_22|PF13401.2|0.34,AAA_22|PF13401.2|1.1,AAA_14|PF13173.2|0.07,AAA_14|PF13173.2|0.53 R_Transcript_164368:204-2960(+)
ATGGCTAGTTCGGTATCACATTTGATTAAGATACCTGTTTCATTTCACTTTCAAAAAAGGAGTCAATTTCAAGGTTCTGGCAAAGGCATAAGCTCTGTAAAAATGTTGGCCGCTACACAGGCACCTAGATTAAGACTTCAAACTTTTTCGGGGTTGCGAGCAGGTACTACCCTTTTGGGCTCTTTGGGATCCTCCAGTGCCACAGATTTTTATTTGAAGATGAATGATGCCCTATTAGTTCGTAAAGGGACAGCAACAAGGGGTGTTGTTACAGCAATGTTTGAACGTTTTACTGAGAAAGCTATCAAAGTTATTCTGGTTGCACAAGAGGAGGCAAGGCGTTTAGGTCACAATGCAGTTGGCACTGAGCAAATCTTGCTAGGCCTTATAGGCGAAGGCACAGGCATTGCTGCGAAAGTTCTGAAGTCTGCAGGATTGAATATGAAAGATGTGCGTATTGAAGTTGAGAAGATAATTGGTAGGGGTGGCGGATTTATCTCTGTTGAGATTCCTTTTAGTCCTCGTGCCAAACGTGTTTTGGAACTCTCACTGGAAGAGGCACGCCAGCTTGGTCAAAACTATATTGGATCTGAACATCTGCTGCTGGGATTGCTTAGTGAAGGTGAAGGTGTAGCTGCTCGTGTCCTTGAGTCTTTAGGTGCTGATCCAAATGATATCCGTAAACAGGTCATACACATGATGGGTGAGAAAAAGGAGCCTGTTCTACATGTAGGTGATGCCCCTAACGGCAGTATGCCGACACTCCAAGAGTATGGCACAAATTTGACAATGGCGGCACAAGAGGGAAAATTAGATCCTGTTGTTGGAAGGCAGGAGCAAATAGAGCGTGTTATCCAAATACTTAGCCGTCGAGCCAAAAATAACCCTTGTCTCATTGGGCAACCTGGTGTTGGTAAAACATCAATTGCCGAGGGTCTAGCTCAAAGAATTGCTAGTGGTGACGTTCCAGAGACAATTGAAGGCAAGCAGGTTATAACTCTTGATATGAGTCGTCTTGTTGCTGGGACTAAATACCGGGGAGAATTTGAGGGTAGACTGAAAAAGCTGATGGAAGAAATCAGAGAGACAAAGGAGGTAATTCTTTTCATAGATGAATTGCATACTCTGGTTGGGGCTGGAGCAGCTGAGGGGGCAATTGATGCTGCAAACATCTTAAAACCAGCTCTTGCAAGGGGTGAGTTACAGTGTGTTGGAGCCACAACACTTGATGAATACAGACAACACATTGAGAAGGACCCTGCACTGGAAAGAAGATTTCAGCCTGTGGTGGTGCCCGAACCTACAGTAGATGAAGCAGTACAGATTCTGAAAGGACTACGTGAGCGATATGAGATTCACCACAAGCTCCGCTATACAGATGAAGCACTAGTTGCAGCAGCAGAACTGTCAATTCAATTCATCAGTGACAGATTTCTTCCTGATAAAGCTATTGATCTTATCGATGAAGCTGGTTCACGGGTGCGGCTGCGAGATGCCGAGCTCCCCGAAGAAGTGAAAGAACTTGAGAGACAGGTGAGACAGATCACCAAGGAGAAGAATGATGCCATCCGTAGCCAAGATTTTGAAAAGGCTGCTGAGTTGCGGGACCAGGAAACGGACATAAAAGTACAAATTTCTGCTCTCATAAGCAAGAGCAAGGAATTGAAAGAGGCGGAGACAGATGATGTTGGTCCAGTAGTAACAGATGTGGACATTAGGCACATAGTTTCAACTTGGACTGGCATACCAGTTCAGAAGGTATCTTCTGACGAGTCTGATCGTCTTCTGAGAATGGAAGAGACCCTCCATGGCAGAGTTATTGGTCAGGACGAAGCTGTTAAAGCCATCAGCTCTGCCATCCGCCGTGCTCGTGTTGGTCTCAAGAACCCCAACCGTCCGATAGCTAGTTTCATCTTCTCAGGCCCAACTGGCGTAGGAAAGTCCGAACTTGCGAAAACCTTAGCTGCTTATTACTTTGGGTCAGAAGATGCTATGGTCCGACTTGATATGAGTGAGTTCATGGAGAGACACACTGTTGCTAAGCTAATCGGATCCCCACCAGGATATGTCGGTTATACTGAGGGGGGCCAGTTAACTGAGGCTGTTAGGCGCCGCCCTTACACATTGGTACTTTTTGATGAGATTGAGAAAGCTCATCCTGATGTCTTCAATATGATGCTTCAGATTCTTGAAGATGGGAGATTGACAGACAGCAAGGGCAGGACGGTAAACTTCAAGAACACCCTTCTAATAATGACCTCAAATATTGGAAGCAGCGTGATTGAGAAGGGTGGCCGTAGTATAGGATTTGATTTATCTTATAACGACCATGATAACAGTTATAACCGTATTAAGAACCTAGTGGTTGAGGAGCTTAAGCAATATTTCAAACCAGAGTTTCTGAACAGATTAGATGACATGATTGTCTTCAGGCAGCTTACGAAGCTCGAAGTCAAGGAAATTGCTGATATCATGTTCAAGGAAGTTTTCAAGAGACTCCAAACAAAGGGTATCGAGCTTCAGGTGACTGAGAGGTTTAAGGATAGGGTAGTGGATGAAGGTTACAACCCTAGTTATGGAGCAAGACCATTGAGGAGGGCTATCATGAGGCTTTTGGAGGATAGCATGGCTGAAAAGATGCTTTCAGGCGAAATAAAAGAAGGCGATTCAGTTATTCTTGATGCTGATTCCGATGGGGATGTCATTGCTCTCAATGGTAATCGTTCCAGTGCTTCTCCTGACCTTCTTCCTGTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_164368.p1 GENE.R_Transcript_164368~~R_Transcript_164368.p1 ORF type:complete len:986 (+),score=206.87,AAA_2|PF07724.10|1.1,AAA_2|PF07724.10|2.4e+03,AAA_2|PF07724.10|2.4e-53,Clp_N|PF02861.16|6.6e-16,Clp_N|PF02861.16|1.2e-17,ClpB_D2-small|PF10431.5|1.2e-24,AAA|PF00004.25|2.1e-15,AAA|PF00004.25|5.7e-06,AAA_5|PF07728.10|2.5e-05,AAA_5|PF07728.10|3e+03,AAA_5|PF07728.10|1.4e-11,AAA_16|PF13191.2|3.5e-05,AAA_16|PF13191.2|1.8e+02,AAA_16|PF13191.2|0.06,AAA_17|PF13207.2|0.11,AAA_17|PF13207.2|0.0001,UVR|PF02151.15|6.6e-09,Sigma54_activat|PF00158.22|0.073,Sigma54_activat|PF00158.22|0.00012,IstB_IS21|PF01695.13|0.0029,IstB_IS21|PF01695.13|1.3,AAA_18|PF13238.2|0.013,AAA_18|PF13238.2|3.2e+03,AAA_18|PF13238.2|1.1,AAA_22|PF13401.2|2e+03,AAA_22|PF13401.2|0.34,AAA_22|PF13401.2|1.1,AAA_14|PF13173.2|0.07,AAA_14|PF13173.2|0.53 R_Transcript_164368:204-2960(+)
MASSVSHLIKIPVSFHFQKRSQFQGSGKGISSVKMLAATQAPRLRLQTFSGLRAGTTLLGSLGSSSATDFYLKMNDALLVRKGTATRGVVTAMFERFTEKAIKVILVAQEEARRLGHNAVGTEQILLGLIGEGTGIAAKVLKSAGLNMKDVRIEVEKIIGRGGGFISVEIPFSPRAKRVLELSLEEARQLGQNYIGSEHLLLGLLSEGEGVAARVLESLGADPNDIRKQVIHMMGEKKEPVLHVGDAPNGSMPTLQEYGTNLTMAAQEGKLDPVVGRQEQIERVIQILSRRAKNNPCLIGQPGVGKTSIAEGLAQRIASGDVPETIEGKQVITLDMSRLVAGTKYRGEFEGRLKKLMEEIRETKEVILFIDELHTLVGAGAAEGAIDAANILKPALARGELQCVGATTLDEYRQHIEKDPALERRFQPVVVPEPTVDEAVQILKGLRERYEIHHKLRYTDEALVAAAELSIQFISDRFLPDKAIDLIDEAGSRVRLRDAELPEEVKELERQVRQITKEKNDAIRSQDFEKAAELRDQETDIKVQISALISKSKELKEAETDDVGPVVTDVDIRHIVSTWTGIPVQKVSSDESDRLLRMEETLHGRVIGQDEAVKAISSAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKTLAAYYFGSEDAMVRLDMSEFMERHTVAKLIGSPPGYVGYTEGGQLTEAVRRRPYTLVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVNFKNTLLIMTSNIGSSVIEKGGRSIGFDLSYNDHDNSYNRIKNLVVEELKQYFKPEFLNRLDDMIVFRQLTKLEVKEIADIMFKEVFKRLQTKGIELQVTERFKDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLSGEIKEGDSVILDADSDGDVIALNGNRSSASPDLLPV*

Click here to download the sequence:
Link to NCBI Protein BLAST