Transcript Information: R_Transcript_165295.p1


Annotated TAIR IDATCG00190.1
Annotated Gene NameRNA polymerase subunit beta
Annotated Gene Symbol(s)RPOB
Annotation TypeOrtholog
Chromosome PositionchrC:23111-26329 | Reverse length=1072
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9185332241207
Replicate 22.2275053486839
Replicate 32.4976894628418
Condition 2: 8 Hour
Replicate 12.0444975643574
Replicate 21.9109987428125
Replicate 31.1589928195728
Condition 3: 24 Hour
Replicate 11.5109755248096
Replicate 21.7765532701644
Replicate 32.3435754527228


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_165295.p1 GENE.R_Transcript_165295~~R_Transcript_165295.p1 ORF type:3prime_partial len:1018 (+),score=65.48,RNA_pol_Rpb2_6|PF00562.24|4.3,RNA_pol_Rpb2_6|PF00562.24|2.2e-124,RNA_pol_Rpb2_2|PF04561.10|3.1e-55,RNA_pol_Rpb2_3|PF04565.12|2.3e-24,RNA_pol_Rpb2_1|PF04563.11|1.2e-11,RNA_pol_Rpb2_7|PF04560.16|5.5e-12 R_Transcript_165295:1663-4713(+)
ATGGGGAATAAAGTTCAAATGCTACGGGATGGAAATGAGGGAATGTCTACAATACCTGGGTTTAATCAGATTCAATTGGAAGGATTTTGTAGGTTCATTGATCAAGGCTTAACGGAAGAACTTTATAAGTTTCCAAAAATTGAAGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGAAACATATCAATTGGTGGAACCCTTGATAAAAGAAAAGGATGCTGTGTATGAATCACTTACATATTCTTCTGAATTATATGTATCCGCGGGATTAATTTGGAAAACCAGTAGGGAGATGCAAGAACAAACAATTTTGATTGGAAACATTCCTCTAATGAATTCCCTGGGAACTTTTATAGTCAATGGAATATACAGAATTGTGATCAATCAAATATTGCAAAGCCCCGGTATTTATTACCGGTCAGAATTGGACCATAACGGAATTTCGGTCTATACCGGTACCATAATATCAGATTGGGGAGGAAGATTCGAATTAGAGATTGATAGAAAAGCAAGGATATGGGCTCGTGTGAGTAGGAAACAAAAAATTTCTATTCTAGTTCTATTATCAGCTATGGGTTTGAATCTAAGAGAAATTCTGGATAATGTTTGCTATCCGGAAATTTTCTTGTCTTTCCTGAATGATAAAGAGAAAAAAAAAATTGGGTCAAAAGAAAATGCTATTTTGGAGTTTTATCAACAATTTGCTTGTGTGGGTGGGGACCCGGTATTTTCGGAATCCTTATGTAAGGAATTACAAAAAAAATTCTTTCAACAAAGATGCGAATTAGGAAAAATTGGTCGACGAAATATGAACCGGAGACTGAACCTTGATATATCTCAAAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCTGCAGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGATGATATGAATCATTTGAAAAATAAGCGTATTCGTTCTGTAGCGGATCTCTTACAAGATCAATTCGGATTAGCTCTGGTTCGTTTAGAAAATGTGGTTCGAGGAACTATATCCGGAGCAATTAGGCATAAATTAATACCGACTCCTCAAAATTTGGTAACTTCAACTCCATTAACAACGACTTATGAATCTTTTTTTGGGTTACACCCATTATCTCAAGTTTTGGATCGAACTAATCCATTAACACAAATAGTGCATGGGAGGAAATTGAGTTATTTGGGCCCTGGGGGGTTGACAGGGCGAACTGCTAGTTTTCGGATACGAGATATCCATCCTAGTCACTATGGACGTATTTGCCCAATTGACACGTCTGAAGGAATCAATGTTGGACTTATTGGATCTTTAGCAATTCATGCGAGGATTGGTCCTTGGGGGTCTCTAGAAAGCCCTTTTTATGAAATTTCTGAGAAATCAAAAAGGATACAGATGCTTTTTTTATCACCAAGCAGAGATGAGTACTATATGGTAGCTGCGGGAAATTCTTTAGCCCTGAATCAAGGTATTCAGGAAGAACAGGTTGTTCCAGCTCGGTACCGTCAAGAATTCCTGACTATTGCATGGGAGCAGGTTCATCTTCGAAGTATTTTTACCTTCCAATATTTTTCTATTGGAGCTTCTCTCATTCCTTTTATCGAGCACAATGATGCAAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCGCTTTCTCGGTCCGAGAAGTGCATTGTTGGAACTGGGTTGGAACGTCAAGCAGCCCTAGATTCGGGGGTTCTTGCTATAGCCGAACATGAAGGAAAGATCGTTTATACCGATACTGATAAGATCATTTTATCAGGTAATGGGGATACTCTAAGCATTCCATTAGTTATGTATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCGGATTCCACGGGGTAAATGCATTAAAAAAGGACAAATTTTAGCAGACGGTGCTGCTACAGTTGGCGGCGAACTAGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTTTGAAGATGCAGTACTCATTAGTGAGCGTCTTGTATATGAAGATATTTATACTTCTTTTCACATACGGAAATATGAAATTCAGACTTATGTGACAAGTCAAGGCACTGAAGGAGTCACTAGTGGAATACCCCATTTAGAGGCCCATTTACTCCGCAATTTAGACAAAAATGGAATTGTGAGGCTGGGATCATGGGTCGAAACTGGGGATATTTTGGTAGGTAAATTAACCCCTCAGATAGCAAAAGAGTCATCGTATGCTCCAGAAGATAGATTATTACGGGCCATACTTGGCATTCAGGTATCCACATCAAAGGAAACTTGTCTAAAACTACCTATAGGCGGTAGGGGTCGAGTTGTTGATGTAAGATGGATCCAGAAAAAGGGGGGTTCTAGTTATAATCCAGAAACGATTCATGTTTATGTTTTACAGAAACGCGAAATCAAAGTAGGCGATAAAGTAGCCGGACGACATGGAAATAAAGGTATCATTTCCAAAATTTTGCCTAGACAAGATATGCCTTATTTGCAAGATGGAAGACCCGTTGATATGGTCTTTAACCCATTAGGAGTACCTTCACGAATGAATGTCGGACAGATATTTGAATGTTCGCTCGGGTTAGCGGGGGGTCTGCTAGATAGACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCGAGAAAACTAGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACATCGAATCCGTGGGTATTTGAACCCGAGTATCCGGGAAAGAGCCGAATATTTGATGGAAGAACAGGAGATCCTTTTGAACAACCTGTTATAATAGGAAATCCTTATATATTGAAATTAATTCATCAAGTTGATGATAAAATCCATGGACGTTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGAGCCAAGCAAGGAGGACAGCGGGTAGGAGAAATGGAGGTTTGGGCTCTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCGGAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_165295.p1 GENE.R_Transcript_165295~~R_Transcript_165295.p1 ORF type:3prime_partial len:1018 (+),score=65.48,RNA_pol_Rpb2_6|PF00562.24|4.3,RNA_pol_Rpb2_6|PF00562.24|2.2e-124,RNA_pol_Rpb2_2|PF04561.10|3.1e-55,RNA_pol_Rpb2_3|PF04565.12|2.3e-24,RNA_pol_Rpb2_1|PF04563.11|1.2e-11,RNA_pol_Rpb2_7|PF04560.16|5.5e-12 R_Transcript_165295:1663-4713(+)
MGNKVQMLRDGNEGMSTIPGFNQIQLEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKEKDAVYESLTYSSELYVSAGLIWKTSREMQEQTILIGNIPLMNSLGTFIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRFELEIDRKARIWARVSRKQKISILVLLSAMGLNLREILDNVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGKIGRRNMNRRLNLDISQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGPWGSLESPFYEISEKSKRIQMLFLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARYRQEFLTIAWEQVHLRSIFTFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGVLAIAEHEGKIVYTDTDKIILSGNGDTLSIPLVMYQRSNKNTCMHQKPRIPRGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTYVTSQGTEGVTSGIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQIAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVVDVRWIQKKGGSSYNPETIHVYVLQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTSNPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSD

Click here to download the sequence:
Link to NCBI Protein BLAST