Transcript Information: R_Transcript_165518.p1


Annotated TAIR IDAT5G08305.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2670134-2671738 | Reverse length=534
E-Value6.5E-213
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.44352989235765
Replicate 20.54943589874425
Replicate 30.72787764324223
Condition 2: 8 Hour
Replicate 10.68651957796015
Replicate 21.0031049797915
Replicate 30.78034961545589
Condition 3: 24 Hour
Replicate 11.0298829410559
Replicate 21.030619574326
Replicate 31.0637015361857


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_165518.p1 GENE.R_Transcript_165518~~R_Transcript_165518.p1 ORF type:complete len:535 (+),score=79.69,PPR|PF01535.16|0.018,PPR|PF01535.16|0.051,PPR|PF01535.16|1.3e-08,PPR|PF01535.16|6.4e-07,PPR|PF01535.16|90,PPR|PF01535.16|0.0098,PPR|PF01535.16|7.1e-06,PPR|PF01535.16|0.092,PPR|PF01535.16|0.017,PPR|PF01535.16|21,PPR|PF01535.16|4.4e+02,PPR_2|PF13041.2|5.8e-06,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|6.6e-06,PPR_2|PF13041.2|4.4e-08,PPR_2|PF13041.2|1,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|0.06,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|1.7e+03,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|43,PPR_1|PF12854.3|0.7,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|0.3,PPR_1|PF12854.3|0.0087,PPR_1|PF12854.3|0.25,PPR_1|PF12854.3|0.0004,PPR_1|PF12854.3|1.4e+03,PPR_3|PF13812.2|6.9,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|4.3e-05,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|5.8e+02 R_Transcript_165518:51-1655(+)
ATGTATGCCACATTGATGAACAATGGCTTCTTACAACAAGCTTTAATCACTCTCCTCGAGAAACCCAGATCAATTCCACAGCTCAAACAAATCCATGCTTTGCTAATTTCTTCTGGGCTCTCACACTTTCACCCTTTTCCCTCCAAATTTTTCTCTCTCCTCACAAATTCATCCAATCTCGATTATGCTCATCGATTGTTGCTTCACAATGCTAGCCCATCAGTTCTCTACTGGAACACTGTTATCAGGGCTTATGCCAGTAGCCGTACCCCCAACATATCTATCAGGGTTTTTGTTGAAATGCTGCGTTTTGGGATATGCCCAGATCACTTTACTTACCCTTTTCTTGTCAAGGCGTCGGCCCGCCTTTCATCTCTCAATCATGGGATGTCGGTTCATTGCAGTGTGATAAAAAGTGGGCATGAGTTGGATTTGTTCATCCGGAATTCTTTGATTCACATGTATAGTTCTTGTTCGGAGATAATGTATGCCCGTAAGGTGTTCGATGAAATGCCCCAGCGGAGTACAGTTTCGTGGAACTCGATGCTAGATGGGTACGCAAAGTGCGGTAATATGAAGCGGGCGAGGGAAGTTTTTGAGTCTATGCCTGATAAGGATGTTGTGTCGTGGAGCTCGCTCATTGATGGGTATGTTAAGGGTGGTGAGTATAGGGAAGCTCTTGTAGTTTTCGATGGGATGAAGGCTGTGGGATCGCCTAAGGCTAATGAGGTGACTATGGTGAGTGTTTTGTGTGCGTGTGCGCATTTAGGTGCGCTCGAGCGAGGGAGGTTGATGCATCAGTATATGGTTGAAAATGAGCTTCCACTAACTATAGTGTTGCTAACTTCGCTTGTGGATATGTATGCCAAATGTGGAGCGATTGAGGAGGCTATGGCTGTGTTTAGATCAATACGAATGGATAGAACTGATGTTTTGCTATGGAATGCAATCATTGGAGGACTTGCAAACCACGGCTATGTGAAGGAGTCGCTAGATCTGTTCAAAGAAATGCAGGTTGTTGGAATTCCACCTGATGAGATCACTTACTTGTGTCTATTGTCTGCCTGTACTCATGGAGGATTGGTAAAGGAAGCTTGGCTATTTCTTGAAGCGCTTGAGAGAAATGGTATGAAACCCAAGTCTGAGCATTACGCGTGTATGGTGGATGTTCTAGCAAGGGCTGGCAGGGTGAAGGAGGCATATGACTTTGTGAACAGAATGCCTGTGGAGCCAACTCCAGCGATGCTGGGTGCCCTCCTTAGTGGATGTATGAACCATGGACAGTTGGACCTTGCTGAAACAGTGGGGAAGTGGCTGATCGAAGTTGACCCAAATCATGATGGCAGATATGTGGGACTCTCCAATGTTTATGCAGCAGTCAAACGTTGGGATGATGCGAAAACAATGAGGCAAGCTATGGAAACAACAGGGGTGAAGAAGTCCCCTGGGTTCAGCTATGTAGAAATTTCTGGAACCTTCGAGTTGTTCATTGCTCATGACAAAACCCATCCAAAGTCGATAGAAATTTACATGATGGTGAATCTTATCTTGAAGCAAATGAAAAGGGTATTGCCTTCTGATGACAAAGGGTACATTTTGTACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_165518.p1 GENE.R_Transcript_165518~~R_Transcript_165518.p1 ORF type:complete len:535 (+),score=79.69,PPR|PF01535.16|0.018,PPR|PF01535.16|0.051,PPR|PF01535.16|1.3e-08,PPR|PF01535.16|6.4e-07,PPR|PF01535.16|90,PPR|PF01535.16|0.0098,PPR|PF01535.16|7.1e-06,PPR|PF01535.16|0.092,PPR|PF01535.16|0.017,PPR|PF01535.16|21,PPR|PF01535.16|4.4e+02,PPR_2|PF13041.2|5.8e-06,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|6.6e-06,PPR_2|PF13041.2|4.4e-08,PPR_2|PF13041.2|1,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|0.06,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|1.7e+03,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|43,PPR_1|PF12854.3|0.7,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|0.3,PPR_1|PF12854.3|0.0087,PPR_1|PF12854.3|0.25,PPR_1|PF12854.3|0.0004,PPR_1|PF12854.3|1.4e+03,PPR_3|PF13812.2|6.9,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|4.3e-05,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|5.8e+02 R_Transcript_165518:51-1655(+)
MYATLMNNGFLQQALITLLEKPRSIPQLKQIHALLISSGLSHFHPFPSKFFSLLTNSSNLDYAHRLLLHNASPSVLYWNTVIRAYASSRTPNISIRVFVEMLRFGICPDHFTYPFLVKASARLSSLNHGMSVHCSVIKSGHELDLFIRNSLIHMYSSCSEIMYARKVFDEMPQRSTVSWNSMLDGYAKCGNMKRAREVFESMPDKDVVSWSSLIDGYVKGGEYREALVVFDGMKAVGSPKANEVTMVSVLCACAHLGALERGRLMHQYMVENELPLTIVLLTSLVDMYAKCGAIEEAMAVFRSIRMDRTDVLLWNAIIGGLANHGYVKESLDLFKEMQVVGIPPDEITYLCLLSACTHGGLVKEAWLFLEALERNGMKPKSEHYACMVDVLARAGRVKEAYDFVNRMPVEPTPAMLGALLSGCMNHGQLDLAETVGKWLIEVDPNHDGRYVGLSNVYAAVKRWDDAKTMRQAMETTGVKKSPGFSYVEISGTFELFIAHDKTHPKSIEIYMMVNLILKQMKRVLPSDDKGYILY*

Click here to download the sequence:
Link to NCBI Protein BLAST