Transcript Information: R_Transcript_165648.p1


Annotated TAIR IDAT5G18475.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6129255-6130775 | Reverse length=506
E-Value3.9E-206
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0860686940428
Replicate 20.56420001118651
Replicate 31.099171669681
Condition 2: 8 Hour
Replicate 11.4099346418759
Replicate 21.2017364521175
Replicate 31.114878195494
Condition 3: 24 Hour
Replicate 11.1897520060422
Replicate 20.97364866503508
Replicate 31.4283722828301


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_165648.p1 GENE.R_Transcript_165648~~R_Transcript_165648.p1 ORF type:complete len:521 (+),score=94.85,PPR_1|PF12854.3|46,PPR_1|PF12854.3|2.4e-09,PPR_1|PF12854.3|3.3e-14,PPR_1|PF12854.3|2.8e-12,PPR_1|PF12854.3|5.1e-13,PPR_1|PF12854.3|3.4e-11,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|3.3,PPR_1|PF12854.3|1.2e+02,PPR_2|PF13041.2|0.29,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|5.2e+03,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|7.3e-15,PPR_2|PF13041.2|3e-19,PPR_2|PF13041.2|8.8e-17,PPR_2|PF13041.2|5.4e-09,PPR_2|PF13041.2|7.6e-16,PPR_2|PF13041.2|5.8e-06,PPR_2|PF13041.2|0.023,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|22,PPR|PF01535.16|1.6e+02,PPR|PF01535.16|5.7e+03,PPR|PF01535.16|4.8e-05,PPR|PF01535.16|2.3e-10,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|3.4e-08,PPR|PF01535.16|2.8e-08,PPR|PF01535.16|0.019,PPR|PF01535.16|1.5,PPR|PF01535.16|3.2,PPR_3|PF13812.2|4.4e+03,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|2.3e+03,PPR_3|PF13812.2|0.00023,PPR_3|PF13812.2|1.2e-06,PPR_3|PF13812.2|0.0002,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|4.5e-05,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|9.5,PPR_3|PF13812.2|1.8e+02,TPR_19|PF14559.2|2.1e+02,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|29,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|1.5e+02,TPR_19|PF14559.2|0.43,TPR_19|PF14559.2|2.7e+02,TPR_12|PF13424.2|5.2,TPR_12|PF13424.2|1.9,TPR_12|PF13424.2|2.5e+02,TPR_12|PF13424.2|49,TPR_12|PF13424.2|1.3e+02,TPR_12|PF13424.2|4.3e+02 R_Transcript_165648:218-1780(+)
ATGAGATTTTCATCACGCAAGCTTCCCTGTTTCTCTTCTTCTTCTTCTTCTCCTCATAGACCATCTTCTTCACTGCCATGGATATCACCCTCCCTTTACGCGAAAGGGAAAAGTCTGAAACCAGATCCTCCACCATCCCCAATTACAGCCGAATCAGCATTATCATCAGAGCATGAACCTCAGAAGAAACTAAGGTTTATCTCCCATGAAGGTGCGATCAACTTGATCAAACATGAAAAGGATCCTCAACGTGCCTTGGACATATTCAACAAGGTGTCTGAGCAAAAGGGGTTCAATCACAACAATGCCACCTATGCTACCATCCTTCACAGGCTCGCCAAGTCGAAAAAGTTCAATGCTGTTGATGCCATTCTTCGTCAAATGAAGTATGAACCCTGCAAGTTTCATGAGGGTATTTTCATAAACCTTATGAAGCATTTCTCCAAGTTCTCCATGCATGAAAGGGTGGTTGAAATGTTTGATTCGATTAGGCCATACGCGAGACAAAGGCCTTCGCTTAATGCTATCAGCACTTGTCTTAATCTGTTGGTGGAATCGAATCAAATGGACTTGGCGCGGAAGTTTCTTTTGAATGCCAAAAAAGGTCTCAACTTGAAGCCAAATACTTGTATTTTTAACATTTTGGTCAAGCATCACTGCAAGCAGGGTGACCTTGAATCAGCTTTTGAGGTAGTCAAGGAGATGAGGAAATCAAGAATGTCTTATCCCAACCTGATTACTTACACAACCTTGATGGATGGTCTGTGTAGGAGAGGTAGACTCAAGGAAGCACTTGAGCTATTTGAAGAAATGGTGTCTAAGGATCATATAGTGCCCGATGTCTTAACTTATAACATCCTGATCAATGGGTTTTGCCGCGGTGGGAAGGTTGATCGAGCGAAGAAAATAATGGAGTTCATGTGTGACAATGGATGCAACCCAAATTTGTTCAACTACACAGCTCTTATGAATGGATTTTGCAAGGAAGGTAGAATACAAGAGGCTATGGAGGTTCTCGACCAGATGAAAAGCGTGGGTATGAAGCTTGATACGGTTGGCTACACCACATTGATTAACTTCTTCTGTAGGGATGGGAAGCTTGAAGACGCGCTGCATTTACTGAAAGAAATGAAAGAAGCAGGGTGCAAAGCAGATGCTGTGACTTTCAAGATCATCGTTGAAGGCCTGTGTAGGCAGAAGAAGTTCCAGGAGGCCATCCAAATGCTCGAAAGGTTACCTTATGAAGGTGTTTACCCAGACAAAGCTAGTTACCGAATTGCGTTAAACTCCTTGTGCTACTCTAATGAGTTAGAGAGGGCTGCTTGGCTGTTGGGGTTGATGCTTGGCAGGGGTTTTGTTCCTCATCATGCTACTTCGAATGAGCTATTGGTTCGCCTGTGTGAGGCTGGACGCGCAGATGATGCACTTGAAGCTTTGTTTGAGTTATTAGAGATGGGATTCAAACCTGAGCCTAATTCATGGCTGATTTTGATAGAAACAATCTGTCGAGAGAGAAAACTGTTGCCTACATTTGTTTTACTTGAGCAGCTTACTGAAGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_165648.p1 GENE.R_Transcript_165648~~R_Transcript_165648.p1 ORF type:complete len:521 (+),score=94.85,PPR_1|PF12854.3|46,PPR_1|PF12854.3|2.4e-09,PPR_1|PF12854.3|3.3e-14,PPR_1|PF12854.3|2.8e-12,PPR_1|PF12854.3|5.1e-13,PPR_1|PF12854.3|3.4e-11,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|3.3,PPR_1|PF12854.3|1.2e+02,PPR_2|PF13041.2|0.29,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|5.2e+03,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|7.3e-15,PPR_2|PF13041.2|3e-19,PPR_2|PF13041.2|8.8e-17,PPR_2|PF13041.2|5.4e-09,PPR_2|PF13041.2|7.6e-16,PPR_2|PF13041.2|5.8e-06,PPR_2|PF13041.2|0.023,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|22,PPR|PF01535.16|1.6e+02,PPR|PF01535.16|5.7e+03,PPR|PF01535.16|4.8e-05,PPR|PF01535.16|2.3e-10,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|3.4e-08,PPR|PF01535.16|2.8e-08,PPR|PF01535.16|0.019,PPR|PF01535.16|1.5,PPR|PF01535.16|3.2,PPR_3|PF13812.2|4.4e+03,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|2.3e+03,PPR_3|PF13812.2|0.00023,PPR_3|PF13812.2|1.2e-06,PPR_3|PF13812.2|0.0002,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|4.5e-05,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|9.5,PPR_3|PF13812.2|1.8e+02,TPR_19|PF14559.2|2.1e+02,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|29,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|1.5e+02,TPR_19|PF14559.2|0.43,TPR_19|PF14559.2|2.7e+02,TPR_12|PF13424.2|5.2,TPR_12|PF13424.2|1.9,TPR_12|PF13424.2|2.5e+02,TPR_12|PF13424.2|49,TPR_12|PF13424.2|1.3e+02,TPR_12|PF13424.2|4.3e+02 R_Transcript_165648:218-1780(+)
MRFSSRKLPCFSSSSSSPHRPSSSLPWISPSLYAKGKSLKPDPPPSPITAESALSSEHEPQKKLRFISHEGAINLIKHEKDPQRALDIFNKVSEQKGFNHNNATYATILHRLAKSKKFNAVDAILRQMKYEPCKFHEGIFINLMKHFSKFSMHERVVEMFDSIRPYARQRPSLNAISTCLNLLVESNQMDLARKFLLNAKKGLNLKPNTCIFNILVKHHCKQGDLESAFEVVKEMRKSRMSYPNLITYTTLMDGLCRRGRLKEALELFEEMVSKDHIVPDVLTYNILINGFCRGGKVDRAKKIMEFMCDNGCNPNLFNYTALMNGFCKEGRIQEAMEVLDQMKSVGMKLDTVGYTTLINFFCRDGKLEDALHLLKEMKEAGCKADAVTFKIIVEGLCRQKKFQEAIQMLERLPYEGVYPDKASYRIALNSLCYSNELERAAWLLGLMLGRGFVPHHATSNELLVRLCEAGRADDALEALFELLEMGFKPEPNSWLILIETICRERKLLPTFVLLEQLTEV*

Click here to download the sequence:
Link to NCBI Protein BLAST