Transcript Information: R_Transcript_166447.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2333081726161
Replicate 20.66204550862201
Replicate 30.41273401074149
Condition 2: 8 Hour
Replicate 14.4118675580622
Replicate 23.3239148682843
Replicate 37.195233038712
Condition 3: 24 Hour
Replicate 10.41365418428296
Replicate 20.69543609114433
Replicate 31.0845259079093


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_166447.p2 GENE.R_Transcript_166447~~R_Transcript_166447.p2 ORF type:complete len:222 (+),score=38.49,UBN2_3|PF14244.2|4.5e-39,Retrotrans_gag|PF03732.13|4e-09 R_Transcript_166447:362-1027(+)
ATGTCTAGTGAGAGAAGAAACAATAATGTTCACTTTAGTGATTTGCAAAATCCTCTATTCTTATATCCTTCTGATGGACCTTCCTCTATCACCATTGAAGAAAAGCTGGTAGGTGCTGTGAATTATAGATCCTGGAAGCGTAATTTGGAAATTGCTTTGGCCACGAAACGAAAGCTTGGATTCATCAAAGGAACTATAAAAAGATGTGATGATGATCCTGTTAAAGCTGAACAATGGGACACTTGCAACAGTATGGTAATTTCCTGGTTATTGAATTCTATGACTGATTCAATACGTCAATCTGTATTGTCCATTGATTCTGCTTTTGCTATGTGGTTGCATCTGGAGAATAGATTTTCTATTAATAATGGATCAAGGAAATATCAGATTAACAAGGAGATATATGACCTAAGACAGAATGGCATGAACATTAATGAATTTTTCACTAAGATGAGATGTCTTTGGGAGGAGCTAGATTCTATGAGAAATTTGCCTAAAATTACTCAGTTTACTGATGAGATTAAGGAGTTCTTAAAGGCTTTGGACAAACAACAAGAAGAGCATAGGTTATTTCAATTTTTGAATGGTCTTGATAACATTTACAATACTCAGAGGAGCAATTTGCTGTTAATCTGCAACAAGAAGAGACTCAGAGAGATGTGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_166447.p2 GENE.R_Transcript_166447~~R_Transcript_166447.p2 ORF type:complete len:222 (+),score=38.49,UBN2_3|PF14244.2|4.5e-39,Retrotrans_gag|PF03732.13|4e-09 R_Transcript_166447:362-1027(+)
MSSERRNNNVHFSDLQNPLFLYPSDGPSSITIEEKLVGAVNYRSWKRNLEIALATKRKLGFIKGTIKRCDDDPVKAEQWDTCNSMVISWLLNSMTDSIRQSVLSIDSAFAMWLHLENRFSINNGSRKYQINKEIYDLRQNGMNINEFFTKMRCLWEELDSMRNLPKITQFTDEIKEFLKALDKQQEEHRLFQFLNGLDNIYNTQRSNLLLICNKKRLREMC*

Click here to download the sequence:
Link to NCBI Protein BLAST