Transcript Information: R_Transcript_166466.p1


Annotated TAIR IDAT5G11580.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3718913-3721125 | Forward length=553
E-Value4E-121
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.4119984118736
Replicate 20.74986787201064
Replicate 31.4725759883241
Condition 2: 8 Hour
Replicate 11.0493942120248
Replicate 22.3958087686985
Replicate 31.5558523388903
Condition 3: 24 Hour
Replicate 11.0658981927148
Replicate 21.1815317262809
Replicate 30.93804448658131


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_166466.p1 GENE.R_Transcript_166466~~R_Transcript_166466.p1 ORF type:3prime_partial len:280 (+),score=49.17,RCC1|PF00415.14|0.001,RCC1|PF00415.14|2.6e-13,RCC1|PF00415.14|4.9e-08,RCC1|PF00415.14|0.00038,RCC1|PF00415.14|0.0037,RCC1_2|PF13540.2|33,RCC1_2|PF13540.2|3.3e-07,RCC1_2|PF13540.2|0.16,RCC1_2|PF13540.2|0.00054,RCC1_2|PF13540.2|0.0092 R_Transcript_166466:770-1606(+)
ATGATGTCATTAGCAATTGATAACCTTGGGACTCTTTGGATTTGGGGCAACAGCCCTCAGGTCAGTAGTTCCTCTGATGACGCATTCTCAATTTCAAGCATTTTGACCCCAATTCCCATTCGGCATTTCCATGGTCGCACAGTTGTCAAGGTAGCATGTGGGAATGAGCATGTTGTTGCCTTAGTCAGTGGTGGGGAAACATACAATGCTGGTGATCTTTTATGCTACACCTGGGGTAACAATAAGCACGGCCAACTGGGTTTGGGTGACACAAAGAGCAGATCACAGCCCCATGTTGTTACAATGTTCAGCGAGGAATCTGATTGGGCAGCATACGAGGTGGCATGTGGTGGACAGCACACTGCTGTGCTCACCCTCAAAAAGAGGTCCAGTGATGCATTAGAGAGTGTTTGCTGGACTTTCGGCCTTGGAGAAAATGGTCAACTTGGACATGCTACCTCTCGAGATGTATTGTGCCCTGAACCTGTTGAACAACTGCCCAAACATGATTATTTTGTTTCTGTAGATTGCGGGCTATTTCACACCAGTGTAGTTTCATCCGCTGGGGAAGTGTGGTCATGGGGCATGGAGAGGGGTCTCGGTCTCTGCCCTGATGTGAGTTTTACTGCGACCTACCAAGGAGATGCACTTTTACCATTGTTAATCCCATGTAATGGGCCATGTGGCCCAAAGTTTCCTACGCCTGTCCAAGTTGCATGTGGGGCAGCCCACACTGTCCTTGCTGCGGATGATGGTTATAGGCTATGGTCGTGGGGGCGAGGAAGAAGTGGAGTTCTCGGAACTGGAAATTTGGATGATTCTTACTCTCCCACAATG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_166466.p1 GENE.R_Transcript_166466~~R_Transcript_166466.p1 ORF type:3prime_partial len:280 (+),score=49.17,RCC1|PF00415.14|0.001,RCC1|PF00415.14|2.6e-13,RCC1|PF00415.14|4.9e-08,RCC1|PF00415.14|0.00038,RCC1|PF00415.14|0.0037,RCC1_2|PF13540.2|33,RCC1_2|PF13540.2|3.3e-07,RCC1_2|PF13540.2|0.16,RCC1_2|PF13540.2|0.00054,RCC1_2|PF13540.2|0.0092 R_Transcript_166466:770-1606(+)
MMSLAIDNLGTLWIWGNSPQVSSSSDDAFSISSILTPIPIRHFHGRTVVKVACGNEHVVALVSGGETYNAGDLLCYTWGNNKHGQLGLGDTKSRSQPHVVTMFSEESDWAAYEVACGGQHTAVLTLKKRSSDALESVCWTFGLGENGQLGHATSRDVLCPEPVEQLPKHDYFVSVDCGLFHTSVVSSAGEVWSWGMERGLGLCPDVSFTATYQGDALLPLLIPCNGPCGPKFPTPVQVACGAAHTVLAADDGYRLWSWGRGRSGVLGTGNLDDSYSPTM

Click here to download the sequence:
Link to NCBI Protein BLAST