Transcript Information: R_Transcript_166469.p1


Annotated TAIR IDAT5G11580.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3718913-3721125 | Forward length=553
E-Value2.1E-164
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9317388483396
Replicate 21.0430127636606
Replicate 31.4842378572021
Condition 2: 8 Hour
Replicate 12.6971471108197
Replicate 22.4630776974092
Replicate 32.3130562129651
Condition 3: 24 Hour
Replicate 13.2726031901263
Replicate 21.7625152893118
Replicate 33.1673352354689


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_166469.p1 GENE.R_Transcript_166469~~R_Transcript_166469.p1 ORF type:internal len:463 (+),score=73.83,RCC1|PF00415.14|0.65,RCC1|PF00415.14|2.9e-14,RCC1|PF00415.14|1.6e-07,RCC1|PF00415.14|0.0013,RCC1|PF00415.14|5.4e-13,RCC1|PF00415.14|1e-07,RCC1|PF00415.14|0.00083,RCC1_2|PF13540.2|5e-09,RCC1_2|PF13540.2|1.6e-10,RCC1_2|PF13540.2|18,RCC1_2|PF13540.2|6.6e-07,RCC1_2|PF13540.2|0.33,RCC1_2|PF13540.2|0.001,RCC1_2|PF13540.2|12 R_Transcript_166469:2-1387(+)
TGCTCTCTGGTCTCTAGTGTATTTCTATTCCCTGGCCCTCAGGCACGAAAAAAAGAAAAAATAACAGTAACCCAAACAGAGCCACATAATCAATTCATGGCTGGCCGGAACCCTAGTATGAAGGTCGTAGCAGTCGCCGCCGGCGAGGCTCACACTCTCGCTCTCACCGGAGACGGAAAGGTTTACTCATGGGGCAGAGGTACTTTTGGCCGTTTGGGTAACGGGTCTGATTCTGATGAGAATTATCCGGTGCCCGTCAAATTTGATAATATTAATAGTAATAATGGTGGTGGTAAAGCTCTCAAATTTGTTGGGGTTGCTTCTGGTGCTTATCACAGCCTTGCTGTTGCTGATGATGGAACTGTCTGGTGCTGGGGCTACAACACCTATGGTCAACTTGGATTTGATGGAGACAATGTGTCGGTGCCCTGTCAATTAGATAATTTTGTTGAGTTGGAGTCTTCCCAGTCTCTTGGAGATGACAGAAAAGGGAAGGGTGAATCCGAATTGAAGGTTTCTTCTATCAAAGCTGGTGGAATGATGTCATTAGCAATTGATAACCTTGGGACTCTTTGGATTTGGGGCAACAGCCCTCAGGTCAGTAGTTCCTCTGATGACGCATTCTCAATTTCAAGCATTTTGACCCCAATTCCCATTCGGCATTTCCATGGTCGCACAGTTGTCAAGGTAGCATGTGGGAATGAGCATGTTGTTGCCTTAGTCAGTGGTGGGGAAACATACAATGCTGGTGATCTTTTATGCTACACCTGGGGTAACAATAAGCACGGCCAACTGGGTTTGGGTGACACAAAGAGCAGATCACAGCCCCATGTTGTTACAATGTTCAGCGAGGAATCTGATTGGGCAGCATACGAGGTGGCATGTGGTGGACAGCACACTGCTGTGCTCACCCTCAAAAAGAGGTCCAGTGATGCATTAGAGAGTGTTTGCTGGACTTTCGGCCTTGGAGAAAATGGTCAACTTGGACATGCTACCTCTCGAGATGTATTGTGCCCTGAACCTGTTGAACAACTGCCCAAACATGATTATTTTGTTTCTGTAGATTGCGGGCTATTTCACACCAGTGTAGTTTCATCCGCTGGGGAAGTGTGGTCATGGGGCATGGAGAGGGGTCTCGGTCTCTGCCCTGATGTGAGTTTTACTGCGACCTACCAAGGAGATGCACTTTTACCATTGTTAATCCCATGTAATGGGCCATGTGGCCCAAAGTTTCCTACGCCTGTCCAAGTTGCATGTGGGGCAGCCCACACTGTCCTTGCTGCGGATGATGGTTATAGGCTACGTTGCACGGAAACGCCTGGGAGGGCACGTCTCCCGTACCAGAAACGGTGCGGGTACGGGAAACACGGGGAAACGCGGGGGAAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_166469.p1 GENE.R_Transcript_166469~~R_Transcript_166469.p1 ORF type:internal len:463 (+),score=73.83,RCC1|PF00415.14|0.65,RCC1|PF00415.14|2.9e-14,RCC1|PF00415.14|1.6e-07,RCC1|PF00415.14|0.0013,RCC1|PF00415.14|5.4e-13,RCC1|PF00415.14|1e-07,RCC1|PF00415.14|0.00083,RCC1_2|PF13540.2|5e-09,RCC1_2|PF13540.2|1.6e-10,RCC1_2|PF13540.2|18,RCC1_2|PF13540.2|6.6e-07,RCC1_2|PF13540.2|0.33,RCC1_2|PF13540.2|0.001,RCC1_2|PF13540.2|12 R_Transcript_166469:2-1387(+)
CSLVSSVFLFPGPQARKKEKITVTQTEPHNQFMAGRNPSMKVVAVAAGEAHTLALTGDGKVYSWGRGTFGRLGNGSDSDENYPVPVKFDNINSNNGGGKALKFVGVASGAYHSLAVADDGTVWCWGYNTYGQLGFDGDNVSVPCQLDNFVELESSQSLGDDRKGKGESELKVSSIKAGGMMSLAIDNLGTLWIWGNSPQVSSSSDDAFSISSILTPIPIRHFHGRTVVKVACGNEHVVALVSGGETYNAGDLLCYTWGNNKHGQLGLGDTKSRSQPHVVTMFSEESDWAAYEVACGGQHTAVLTLKKRSSDALESVCWTFGLGENGQLGHATSRDVLCPEPVEQLPKHDYFVSVDCGLFHTSVVSSAGEVWSWGMERGLGLCPDVSFTATYQGDALLPLLIPCNGPCGPKFPTPVQVACGAAHTVLAADDGYRLRCTETPGRARLPYQKRCGYGKHGETRGK

Click here to download the sequence:
Link to NCBI Protein BLAST