Transcript Information: R_Transcript_166731.p1


Annotated TAIR IDAT1G09910.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:3220151-3224451 | Reverse length=675
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3191667946626
Replicate 20.7741998678576
Replicate 31.2162869520081
Condition 2: 8 Hour
Replicate 11.1556750417579
Replicate 22.9352779998017
Replicate 33.2394467331369
Condition 3: 24 Hour
Replicate 10.44019394389403
Replicate 20.35782868406541
Replicate 30.71022050606452


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_166731.p1 GENE.R_Transcript_166731~~R_Transcript_166731.p1 ORF type:complete len:678 (+),score=84.78,Rhamnogal_lyase|PF06045.7|1.8e-58,CBM-like|PF14683.2|3.2e-52,fn3_3|PF14686.2|7e+03,fn3_3|PF14686.2|1.4e-31 R_Transcript_166731:61-2094(+)
ATGGAGCTTATATACAAAAGAAGAACCCCACTATTCATTTTTATCGTCTTGGCAATTGTCACCTGCTGTGATGCAAGAATCATAAGTGGGAAAAAGGAGACAACTCGTGATAATGAAAGATCAGAAAATTCTTCTCATCAGTATCCTGTTACGTTGAGCGTATTTAAACAACATGCTGTCATAGACAATGGAATTCTCCAGCTCACTTTGTCAATTCCGGGGGGTGACGTGACCGGAATCAAGTATGGTGGATTAACAAACGTGCTTGATCCCAGCAACAAAGAGATTAGTAGGGGGTATTGGAACATCTTTTGGCAAACACAACATTCCTATGGCACAGAGTGGCTTCATATGAAAAAATTCAGAATAATAAGGAATGATGAAAATCAAGTAGAGGTTTCCTTTGCAACTGAGTGGAATGGAGAAGCATGGTCAATCCCATTGAACATAGACAAGAGGTACATAATGCTTCGAGGCTCATCTGGGTTTTACAATTATGTCATATTAGATCATAAAGATGATTGGCCTGCACTAGATATTACTCAGATCAGGGTGGCCTATAAGCCTCATATGAAAAAGTTTGATTACATTGCCATTTCAGATGATATTCAAAAGATCATGCCTAATCAACAGGATGTTGCATATGGTCATACCCTTGATTACAAAGAGGCCGTTCTTTGGACAAATTATTCTGATCCAAGGCGTGTCAAACAGGTGGAGGACAAATACCAGTATTCAGAAGACATGAAAGATCAGGGAGTAAATGGTTGGATATCCTCGAATTCTCAAGTCGGATTTTGGCTCATCAAACCAAGTACAGAGTTCTATTCAGCTGGTCCTTTCAAACAAGAACTCACTTCTCATATGGGACCAACCAGCCTCGTTGTCTTTTTTGGTGGGCATTATGTTGGTAAAGATCTGAAAATAAGCCTTGCAGATGGAGAGCCCTGGACTAAGGTCCTAGGTCCATATTTTGTCTACTTGAACAATGTATCTACTGTGGAAGATCCCTACACACAACTATGGGACAATGCAAAAACTCAGATGCAACAAGAAACTCAAAAATGGCCCTATGATTTTCTGTCATCGGAAGCTTATTCTAAATCTAATCAACGAGGATCAGTTGGAGGTCGACTGATGATTCGTGATGGAGACAAGAGTACAGAGTTGGTTCCAGCACGATCTGCTTGGGTGGGGTTGGCCGCACCTGGTGAAGAGGGATCATGGCAAACAGAAACCAAGGGCTATCAGTTTTGGACACAGGCAGATGACAAAGGAAACTTCATCATCAAAGAAATCCACGAGGGGGAGTATAGCCTTTATGCATGGGTTCCCGGTTTCATAGGAGACTATAAATACAATTCTTCAAACATCACAGTTAAACCAGGGAGTCTTATTGATTTGAATGAGATTATTTACGAGCCACCAAGAAATGGACGTACCCTCTGGGAAATAGGCATTCCTGATCGTATTGCTGCTGAGTTTTTCGTGCCTGATCCCAGCCCGAACCTCATAAACCCTGCATTACTTCATAGTGAGAGGAACAATTTCAGACAATACGGCTTATGGGACCGGTACAGTGATCTGTATCCTGAGAATGATCTGATTTACACGGTTGGAGTTAGTGATTATAGAAAGGATTGGTTTTTTGCTCATGTGCCAAGGCGGACAAACGGAACAAGGTACAAATCAACAACATGGCAAGTTCAGTTCACTCTTAAAAACGCAGTCAATCCACACGGAAGCTACACATTGAGATTAGCATTGGCTTCTGCATCAAATGCCGAAGTCCAAGGTCGGTTCAACGAATTGGATCGCAGTTCTAGACCACATTTTACAACCTGGAGGATAGGCAGTGATAACTCAATTGCAAGGCATGGCATACATGGCTTGTACTGGTTGTTCAGCTTCGACGTACCAGGCTACTTGCTTCAAAATGGAAAGAATACACTTTACCTTACACAACCATATTCATCAAGTCCATTCTTCGGGGTTATGTATGATTACATTCGTTTAGAGGATCCTAGTTCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_166731.p1 GENE.R_Transcript_166731~~R_Transcript_166731.p1 ORF type:complete len:678 (+),score=84.78,Rhamnogal_lyase|PF06045.7|1.8e-58,CBM-like|PF14683.2|3.2e-52,fn3_3|PF14686.2|7e+03,fn3_3|PF14686.2|1.4e-31 R_Transcript_166731:61-2094(+)
MELIYKRRTPLFIFIVLAIVTCCDARIISGKKETTRDNERSENSSHQYPVTLSVFKQHAVIDNGILQLTLSIPGGDVTGIKYGGLTNVLDPSNKEISRGYWNIFWQTQHSYGTEWLHMKKFRIIRNDENQVEVSFATEWNGEAWSIPLNIDKRYIMLRGSSGFYNYVILDHKDDWPALDITQIRVAYKPHMKKFDYIAISDDIQKIMPNQQDVAYGHTLDYKEAVLWTNYSDPRRVKQVEDKYQYSEDMKDQGVNGWISSNSQVGFWLIKPSTEFYSAGPFKQELTSHMGPTSLVVFFGGHYVGKDLKISLADGEPWTKVLGPYFVYLNNVSTVEDPYTQLWDNAKTQMQQETQKWPYDFLSSEAYSKSNQRGSVGGRLMIRDGDKSTELVPARSAWVGLAAPGEEGSWQTETKGYQFWTQADDKGNFIIKEIHEGEYSLYAWVPGFIGDYKYNSSNITVKPGSLIDLNEIIYEPPRNGRTLWEIGIPDRIAAEFFVPDPSPNLINPALLHSERNNFRQYGLWDRYSDLYPENDLIYTVGVSDYRKDWFFAHVPRRTNGTRYKSTTWQVQFTLKNAVNPHGSYTLRLALASASNAEVQGRFNELDRSSRPHFTTWRIGSDNSIARHGIHGLYWLFSFDVPGYLLQNGKNTLYLTQPYSSSPFFGVMYDYIRLEDPSS*

Click here to download the sequence:
Link to NCBI Protein BLAST