Transcript Information: R_Transcript_167032.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value8E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.21925478624287
Replicate 20.12610390640419
Replicate 30.068789001790248
Condition 2: 8 Hour
Replicate 10.14706225193541
Replicate 20.20144938595663
Replicate 30.21803736480945
Condition 3: 24 Hour
Replicate 10.13788472809432
Replicate 20.13246401736082
Replicate 30.065728842903596


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_167032.p1 GENE.R_Transcript_167032~~R_Transcript_167032.p1 ORF type:complete len:333 (+),score=42.71,UBN2|PF14223.2|1.3e-15,UBN2_2|PF14227.2|7.9e-11,UBN2_3|PF14244.2|2.2e-08 R_Transcript_167032:185-1183(+)
ATGGTGGCTGACTCAGATTCTTCTCCCAGACACCAAACTCCTGACCACTCCTATCATCCGGCCTTCCATGCTCCCAATATTAAAACAATCATTCCCCTCACTTTGGACTTTGAGAAAGTCCCTTATGCCTCTTGGTCCACCTTGTTCAAGATTCATCTCAAATCCTATAATTTATTGTTTCTTATTGATGACAAAATTTCCAAACCAACTCTTGATGATGCCCTCGTGCAACAACTTGATGCCATAGTCCTTAAATGGATTTTTTCTACAATTTCAGAGGAACTTCTCACCATCATACTGGATGATGATGCCACTGCTCGTGGTGCCTGGAATCGTCTTCATGACCTCTTCCAAGACAACAAAGAGTCTCGCGCGGTGTTTTTGGAGAAACAATTCAATGATGTTGACATGGTCAAGTACCCCTCCCTGAATACTAATTGCCAAAAGTTGAAATCAATTGCTGATCAATTGAAAAACATTGGATCCCTTATGTCTGAGACTCATATGGTGATTCGTTTATTGTCCGGATTGAGCTCTAAATACAACGCGACTGCGGGACTCATCGAGAACACAAAGCCCATTCCGAGTTTTGCCAGGGCTTGGTCCATGCTTTCTCTTGCTGATGCTCGGTTCTCCAAACAGGAAGGCTCATCATCTTCTTCTGCTGTCCTTGTTGCCTCCTCAACTGGTTCGACCACGCAACCCACTCTGCAACACTATGGATGTGGTTCATCTTCCTACTCGGGAACCAACAACCGTGGTCCTCATCACAGGGGAGGACGTGGCCGTGGCCGTGGCCAACAACATAAGACTAATTCTATTGGGCATCCCCCTCAACAAATGATGTGGCCATACTATGCTCCGTGGTTCCCGTCGCAGGTAGTACCGCCATGCCCATACCCCTCTCGTACTCCACGGGTGCATCAACTGGGCATTCTTTGTCCTTGGCCACAAGCTCTGTTTGTCCAACCTACAGGTGCAACGCCCTCCGAATCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_167032.p1 GENE.R_Transcript_167032~~R_Transcript_167032.p1 ORF type:complete len:333 (+),score=42.71,UBN2|PF14223.2|1.3e-15,UBN2_2|PF14227.2|7.9e-11,UBN2_3|PF14244.2|2.2e-08 R_Transcript_167032:185-1183(+)
MVADSDSSPRHQTPDHSYHPAFHAPNIKTIIPLTLDFEKVPYASWSTLFKIHLKSYNLLFLIDDKISKPTLDDALVQQLDAIVLKWIFSTISEELLTIILDDDATARGAWNRLHDLFQDNKESRAVFLEKQFNDVDMVKYPSLNTNCQKLKSIADQLKNIGSLMSETHMVIRLLSGLSSKYNATAGLIENTKPIPSFARAWSMLSLADARFSKQEGSSSSSAVLVASSTGSTTQPTLQHYGCGSSSYSGTNNRGPHHRGGRGRGRGQQHKTNSIGHPPQQMMWPYYAPWFPSQVVPPCPYPSRTPRVHQLGILCPWPQALFVQPTGATPSES*

Click here to download the sequence:
Link to NCBI Protein BLAST