Transcript Information: R_Transcript_167037.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-30
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.31362475867214
Replicate 20.25253282287644
Replicate 30.27551058964445
Condition 2: 8 Hour
Replicate 10.12621579869714
Replicate 20.49946986930483
Replicate 30.28069500959361
Condition 3: 24 Hour
Replicate 10.63114246674101
Replicate 20.37895633832607
Replicate 30.33846966010666


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_167037.p1 GENE.R_Transcript_167037~~R_Transcript_167037.p1 ORF type:3prime_partial len:582 (+),score=66.32,UBN2|PF14223.2|2e-16,gag_pre-integrs|PF13976.2|6.1e-11,UBN2_2|PF14227.2|8.9e-11,UBN2_3|PF14244.2|4.1e-09 R_Transcript_167037:185-1927(+)
ATGGTGGCTGACTCAGATTCTTCTCCCAGACACCAAACTCCTGACCACTCCTATCATCCGGCCTTCCATGCTCCCAATATTAAAACAATCATTCCCCTCACTTTGGACTTTGAGAAAGTCCCTTATGCCTCTTGGTCCACCTTGTTCAAGATTCATCTCAAATCCTATAATTTATTGTTTCTTATTGATGACAAAATTTCCAAACCAACTCTTGATGATGCCCTCGTGCAACAACTTGATGCCATAGTCCTTAAATGGATTTTTTCTACAATTTCAGAGGAACTTCTCACCATCATACTGGATGATGATGCCACTGCTCGTGGTGCCTGGAATCGTCTTCATGACCTCTTCCAAGACAACAAAGAGTCTCGTGCGGTGTTTTTGGAGAAACAGTTCAATGATGTTGACATGGTTAAGTACCCCTCCCTGAATACTTATTGCCAGAAGTTAAAATCCATTGCTGATCAATTGAAAAACATTGGATCCCCTGTGTCTGAGACTCGTATGGTGATTCGCTTATTGTCTGGATTGAGCTATAGATACAACGCGACTGCGGGACTCATCGAGAACACAAAGCCCATTCCGAGTTTTGCCAGGGCTTGGTCCATGCTTTCTCTTGCTGATGCTCGGTTCTCCAAACAGGAAGGCTCATCATCTTCTTCAGCTGTCCTTGTTGCTTCCTCAACTGGTTCGACCATGCAACCCACTCTGCAACACTATGGACGTGGTTCATCTTCCCACTCGGGAACCAACAACCATGGTCCTCATCACGGAGGAGGACGTGGCCGTGGACGTGGTCGTGGCCAGAACCGTGGCCAACAACATACGCCTGATTATAATAGGCATCCCCCTCAACAAATGATGTGGCCATACTATGCTCCGTGGTTCCCGTCGCAGGTAGTACCGCCATGCCCATACCCCTCTCGTACTCCACAAGTGCATCAACCCGGTATTCTTGGTCCTCGGCCACAAGTTCTGTTAGTCCAACATGCTGGTGCAACGCCCTCCGAATCGCAACCCACTGATATTGCAGCACTTATGCAGACTATGTCTCTCACGCCACCAGACCCAAATTGGTACATGGACACTGGGGCCACAAATCATTTAGCCACTGATGCAGGCAACTTACCAAACTCAATTTCTAGGCACAATGTGAACTCATCTATTATGGTTGGTAATGGCATGTGTGTCCCAATAACGGGTTCCGTGACTTCTCATCTTCCCAAACCTCACCCACCTCTCTCCCTTCGTAATGTACAAATAACCCCTCACATTATTAAAAACCTGATATCTGTTAGACAGTTCACCACATACAATAATGTCTTTGTTACTTTTGACCCGTTTGGTTTTTCTGTGAAGGACCTTCGAGCAGGGACAACCTTGATGCGGTGCAATAGTACGGGCTCCCTTTATCCTCTCTCCCGTGGCTCTAGCTCTCTTGCGTCTGTGTCGTTGGTCACTGTCTCCCCAGATTACTGGCATTATCGTCTTGGGCATCCTGCAGCTCCTATTCTTTCTGCTCTAAATTCTTCTCACTTAATTCAATGTAATAAGGGGAATAGCCCCACTTTCTGCTCTTCATGTCAATTAGGAAAACATTCCCGTTTGCCATTTTATCCCTCTAAAAATGTAACTCATGCCCCCTTTGATATTATTCATAGTGATTTGTGGCATTCACCGATTAAAAGCTCGTCTGGTTATCTCTATTATGTCTTGTTCTTGGATGACTTTACCAATTTTTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_167037.p1 GENE.R_Transcript_167037~~R_Transcript_167037.p1 ORF type:3prime_partial len:582 (+),score=66.32,UBN2|PF14223.2|2e-16,gag_pre-integrs|PF13976.2|6.1e-11,UBN2_2|PF14227.2|8.9e-11,UBN2_3|PF14244.2|4.1e-09 R_Transcript_167037:185-1927(+)
MVADSDSSPRHQTPDHSYHPAFHAPNIKTIIPLTLDFEKVPYASWSTLFKIHLKSYNLLFLIDDKISKPTLDDALVQQLDAIVLKWIFSTISEELLTIILDDDATARGAWNRLHDLFQDNKESRAVFLEKQFNDVDMVKYPSLNTYCQKLKSIADQLKNIGSPVSETRMVIRLLSGLSYRYNATAGLIENTKPIPSFARAWSMLSLADARFSKQEGSSSSSAVLVASSTGSTMQPTLQHYGRGSSSHSGTNNHGPHHGGGRGRGRGRGQNRGQQHTPDYNRHPPQQMMWPYYAPWFPSQVVPPCPYPSRTPQVHQPGILGPRPQVLLVQHAGATPSESQPTDIAALMQTMSLTPPDPNWYMDTGATNHLATDAGNLPNSISRHNVNSSIMVGNGMCVPITGSVTSHLPKPHPPLSLRNVQITPHIIKNLISVRQFTTYNNVFVTFDPFGFSVKDLRAGTTLMRCNSTGSLYPLSRGSSSLASVSLVTVSPDYWHYRLGHPAAPILSALNSSHLIQCNKGNSPTFCSSCQLGKHSRLPFYPSKNVTHAPFDIIHSDLWHSPIKSSSGYLYYVLFLDDFTNFL

Click here to download the sequence:
Link to NCBI Protein BLAST