Transcript Information: R_Transcript_167504.p1


Annotated TAIR IDAT5G12100.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3911388-3913838 | Forward length=816
E-Value1.3E-261
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2759864894155
Replicate 21.5552815123184
Replicate 32.120994221866
Condition 2: 8 Hour
Replicate 12.1160624028484
Replicate 22.3741183189407
Replicate 32.7339462909719
Condition 3: 24 Hour
Replicate 12.2957807227704
Replicate 21.9332387422605
Replicate 33.3236884894918


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_167504.p1 GENE.R_Transcript_167504~~R_Transcript_167504.p1 ORF type:complete len:810 (+),score=159.05,PPR_2|PF13041.2|5.4e+03,PPR_2|PF13041.2|5.8e+02,PPR_2|PF13041.2|0.00045,PPR_2|PF13041.2|0.00032,PPR_2|PF13041.2|1.6e-18,PPR_2|PF13041.2|5e-19,PPR_2|PF13041.2|6.5e-15,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|0.0021,PPR_2|PF13041.2|1.6e-12,PPR_2|PF13041.2|1.8e-13,PPR_2|PF13041.2|7.4e-14,PPR_2|PF13041.2|2.3e-10,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|1.3e-14,PPR_2|PF13041.2|1.3e-13,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|8.2e-11,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|0.0042,PPR_2|PF13041.2|0.043,PPR_1|PF12854.3|7.3e-10,PPR_1|PF12854.3|1.6e-13,PPR_1|PF12854.3|2.4e-10,PPR_1|PF12854.3|0.0083,PPR_1|PF12854.3|9.1e-09,PPR_1|PF12854.3|0.0039,PPR_1|PF12854.3|8.2e-09,PPR_1|PF12854.3|0.00026,PPR_1|PF12854.3|3.3e-11,PPR_1|PF12854.3|1.2e-10,PPR_1|PF12854.3|2.7e-10,PPR_1|PF12854.3|3.5e-08,PPR_1|PF12854.3|24,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|0.00081,PPR_1|PF12854.3|0.4,PPR_1|PF12854.3|4.5,PPR|PF01535.16|25,PPR|PF01535.16|2.7,PPR|PF01535.16|6.4,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|5e-10,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|0.00075,PPR|PF01535.16|0.00028,PPR|PF01535.16|4.9e-05,PPR|PF01535.16|6.7e-06,PPR|PF01535.16|8.8e-05,PPR|PF01535.16|4.4e-06,PPR|PF01535.16|5.3e-06,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|9.6e-08,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|5.6e-06,PPR|PF01535.16|0.07,PPR|PF01535.16|2.9e-05,PPR|PF01535.16|0.027,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|26,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|60,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|5.6e-06,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|0.3,PPR_3|PF13812.2|0.006,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|0.036,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|0.0034,PPR_3|PF13812.2|7.6,PPR_3|PF13812.2|2.9e+02,MRP-S27|PF10037.5|2.7e+02,MRP-S27|PF10037.5|3.9,MRP-S27|PF10037.5|1.8e+03,MRP-S27|PF10037.5|3.1,MRP-S27|PF10037.5|0.74,MRP-S27|PF10037.5|8.5e+02,MRP-S27|PF10037.5|0.13,TPR_10|PF13374.2|2e+03,TPR_10|PF13374.2|6.9e+02,TPR_10|PF13374.2|22,TPR_10|PF13374.2|2.2e+03,TPR_10|PF13374.2|7.6e+02,TPR_10|PF13374.2|1.5e+03,TPR_10|PF13374.2|6.5,TPR_10|PF13374.2|63,TPR_10|PF13374.2|4.6e+03,TPR_10|PF13374.2|3.1e+02 R_Transcript_167504:148-2577(+)
ATGGTGAAATACCTCAGGTCCCATCTAAAACCCCAAAAGCCATCAAATCCCTCAAAATCCACTTCACTCTTTCTCTCAAACTCCTTCTCAAACCTCAATTCCACCTCCAGCTCCAACCTTACTTCCCCAAACGATCACCAAAAGCAAGAAACCTTAAGAAAGCTCCGAGTTTTACTCCAACAATCCCGCTTTGACTCAGCCCACAAACTCCTTCACCCTCTTCTCACTTCCAACACCCTCTTTTCTTCTCCCTCTGAACTTTGTCACTCATTTTCTCTCTCCTACCCTTCTCTTAGCCTCCCTTTTTACAGTCTTGTCTTGTCCTCTTGTGCTCACTCTAACTTAACCCATCAAGCCTTGTCTTTACTTGCTATTATCCGTAAAGATGGAAACTTTCCTACCATGGAGGCCTTTAATAAGCTCATTGATCGCTTGGTTACTTCCCGTCAGTTTGATGTTGCTCTTAAGTTGTTTCAGGATGTTTTGGATTCGGGTATTCGGCTCGATAAGTTTGCTTATGGTAAGGCTGTACACTCTGCTGTCAAGCTGGGGGACTTGGATTTGGGTTTGAAGTTGTTGGGACTAATGAAGAAGAGAAGGGTTGGTGTTAGTGTGTTTGTGTATAATGTTTTGATTGGTGGGTTTTGTAAAGAGAGGAGGTTGAAGGATGCACTCCAACTGTTCGATGAAATGTCTCAAAGAAAGTTGGTTCCTAGTCAGGTTACTTATAATACTCTTATTGATGGGTATTGTAAAGCTGGCAATTTGGAGGAGGCATTCAATTTGAAGGAAAGGATGAAGCTTGAGAATGTAAGACCTAGCGAGGTTACGTTCAATTCGTTGCTCAATGGGCTATGTAGGGCAAAAAAGATAGAAGGTGCTAACAAGGTGTTTGAGGAGATGAGGTTACATGGTTTTTTGCCTGATGGGTTTACTTATAGTATCCTCTTTGATGGGCATTCGAGGTGCGGTAATGTCGATTCAATGTTGGCTCTTTTGGATGAAGTAGTGGCCAAAGGGATTAAGCTTAATGACTATACTTGTGCAACTTTACTGAATGGTTTGTGCAAGGAAGGGAGGGTGCAAAAAGCTGAGGAAATTCTCAACAAGTTTGCAGAAAGTGGTCTTGCATCGATGGAGGTGGGTTACAACATAATTCTGAAGGGGTATTGTATAGCAAATGATATGGAAAAAGTGTATTCTGTTATGAAGCAAATGGAAAGTCATGGGATTAGGCCAAGCTGTGTTACTTTCAATTCATTGATTGACAAATTATGTGAAGTAGGGAAAATGGATGAGGCAGAGAACTGGGTGAAAAAGATGGGAGAGAAGGAAGTTGCTCCTACTGTTGAGACATACAACATTCTCATTGATGGTTATGGGAGGAAGTGTATATTCGATAGGTGTTTTGAGATCCTAGAAGTTATGGAAAAGAAGGGTTTGAAGCCAAATGTTGTCACTTATGGTTCTCTTATAAACCGGCTCTGCAAGGATGGTAGGCTTCTTGAAGCTGAACTTGTCCTTAGAGATATGGGGAGAAGAGGGGTTGTGCCAAATGCACAGATATATAACATGCTTATTGATGGTCACTGCACTGCAGGGAAGTTGAAAGTGGCATTTTCTTTTTTTAAAGAGATGTCAGACAACAATATAGTTCCAACATTGGTGACTTATAATTCTCTCATTCATGGCCTATGTAAGACGGGGAAATTGCAGGAAGCTGAAGATTTTGTTCTGCAGATAACTAATAGAGGCTTAGCTCCTGATGAAATCACATATAATGCCTTGATCTATGCATACTGTGGTGCTGGAAAAATCTCAAAAAGCTTAGAGCTATATGAATCCATGAAGCAAAAAGGCATCAAACCAACCTTAGGTACCTATCATTCCCTAATTACAGGGTGCAACAAAATTGGGCTGGCGCTAGTAGATAAAATATATCAAGAAATGTTGGAGTTTGGTTTAGCTCCTGACAGAGTTGTATATAATGCCCTAATTTATTCCTATGCGGAGCATGGAGATACTGGGAAGGCACTTTCCTTGAGAGATGAGATGACAAATAAAGGAATTGCCCCTGACAAGATGACATTTAATAGTCTGATGTTGGGGCATTTTAAGGTGGGAGACCAGAAGAAAGTAATGGAGCTCGTTGAGGACATGAAGGCTAGAGGGATGCCTTTAAAAGCTGACACTTACACGGTACTAATTGAAGGACATTGCAAGCTGAAAGACTTCTATGGGGCATATGGTTGGTACAGAGAAATGGTTGGCAAGGGTTTTCTCCTGGCTGCCAGTTTGTGCAATGAACTTGTTAGTGGCCTTAAAAAGGAGGGAAGGCTAAAAGAGGCTCGGTTAATTTACTCCGAAATGAGTGTAAAAGGGCTAGATGATTGGAGCGCGGATAGCCATCTTTCTGTTGTTGCCAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_167504.p1 GENE.R_Transcript_167504~~R_Transcript_167504.p1 ORF type:complete len:810 (+),score=159.05,PPR_2|PF13041.2|5.4e+03,PPR_2|PF13041.2|5.8e+02,PPR_2|PF13041.2|0.00045,PPR_2|PF13041.2|0.00032,PPR_2|PF13041.2|1.6e-18,PPR_2|PF13041.2|5e-19,PPR_2|PF13041.2|6.5e-15,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|0.0021,PPR_2|PF13041.2|1.6e-12,PPR_2|PF13041.2|1.8e-13,PPR_2|PF13041.2|7.4e-14,PPR_2|PF13041.2|2.3e-10,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|1.3e-14,PPR_2|PF13041.2|1.3e-13,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|8.2e-11,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|0.0042,PPR_2|PF13041.2|0.043,PPR_1|PF12854.3|7.3e-10,PPR_1|PF12854.3|1.6e-13,PPR_1|PF12854.3|2.4e-10,PPR_1|PF12854.3|0.0083,PPR_1|PF12854.3|9.1e-09,PPR_1|PF12854.3|0.0039,PPR_1|PF12854.3|8.2e-09,PPR_1|PF12854.3|0.00026,PPR_1|PF12854.3|3.3e-11,PPR_1|PF12854.3|1.2e-10,PPR_1|PF12854.3|2.7e-10,PPR_1|PF12854.3|3.5e-08,PPR_1|PF12854.3|24,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|0.00081,PPR_1|PF12854.3|0.4,PPR_1|PF12854.3|4.5,PPR|PF01535.16|25,PPR|PF01535.16|2.7,PPR|PF01535.16|6.4,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|5e-10,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|0.00075,PPR|PF01535.16|0.00028,PPR|PF01535.16|4.9e-05,PPR|PF01535.16|6.7e-06,PPR|PF01535.16|8.8e-05,PPR|PF01535.16|4.4e-06,PPR|PF01535.16|5.3e-06,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|9.6e-08,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|5.6e-06,PPR|PF01535.16|0.07,PPR|PF01535.16|2.9e-05,PPR|PF01535.16|0.027,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|26,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|60,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|5.6e-06,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|0.3,PPR_3|PF13812.2|0.006,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|0.036,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|0.0034,PPR_3|PF13812.2|7.6,PPR_3|PF13812.2|2.9e+02,MRP-S27|PF10037.5|2.7e+02,MRP-S27|PF10037.5|3.9,MRP-S27|PF10037.5|1.8e+03,MRP-S27|PF10037.5|3.1,MRP-S27|PF10037.5|0.74,MRP-S27|PF10037.5|8.5e+02,MRP-S27|PF10037.5|0.13,TPR_10|PF13374.2|2e+03,TPR_10|PF13374.2|6.9e+02,TPR_10|PF13374.2|22,TPR_10|PF13374.2|2.2e+03,TPR_10|PF13374.2|7.6e+02,TPR_10|PF13374.2|1.5e+03,TPR_10|PF13374.2|6.5,TPR_10|PF13374.2|63,TPR_10|PF13374.2|4.6e+03,TPR_10|PF13374.2|3.1e+02 R_Transcript_167504:148-2577(+)
MVKYLRSHLKPQKPSNPSKSTSLFLSNSFSNLNSTSSSNLTSPNDHQKQETLRKLRVLLQQSRFDSAHKLLHPLLTSNTLFSSPSELCHSFSLSYPSLSLPFYSLVLSSCAHSNLTHQALSLLAIIRKDGNFPTMEAFNKLIDRLVTSRQFDVALKLFQDVLDSGIRLDKFAYGKAVHSAVKLGDLDLGLKLLGLMKKRRVGVSVFVYNVLIGGFCKERRLKDALQLFDEMSQRKLVPSQVTYNTLIDGYCKAGNLEEAFNLKERMKLENVRPSEVTFNSLLNGLCRAKKIEGANKVFEEMRLHGFLPDGFTYSILFDGHSRCGNVDSMLALLDEVVAKGIKLNDYTCATLLNGLCKEGRVQKAEEILNKFAESGLASMEVGYNIILKGYCIANDMEKVYSVMKQMESHGIRPSCVTFNSLIDKLCEVGKMDEAENWVKKMGEKEVAPTVETYNILIDGYGRKCIFDRCFEILEVMEKKGLKPNVVTYGSLINRLCKDGRLLEAELVLRDMGRRGVVPNAQIYNMLIDGHCTAGKLKVAFSFFKEMSDNNIVPTLVTYNSLIHGLCKTGKLQEAEDFVLQITNRGLAPDEITYNALIYAYCGAGKISKSLELYESMKQKGIKPTLGTYHSLITGCNKIGLALVDKIYQEMLEFGLAPDRVVYNALIYSYAEHGDTGKALSLRDEMTNKGIAPDKMTFNSLMLGHFKVGDQKKVMELVEDMKARGMPLKADTYTVLIEGHCKLKDFYGAYGWYREMVGKGFLLAASLCNELVSGLKKEGRLKEARLIYSEMSVKGLDDWSADSHLSVVAK*

Click here to download the sequence:
Link to NCBI Protein BLAST