Transcript Information: R_Transcript_168071.p2


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value2.7E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.8600871654056
Replicate 20.21985654886176
Replicate 31.0793750699758
Condition 2: 8 Hour
Replicate 10.38459473739129
Replicate 20.58536339898392
Replicate 30.38013844231177
Condition 3: 24 Hour
Replicate 10.96158354880436
Replicate 20.69283535781918
Replicate 30.22919062499369


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_168071.p2 GENE.R_Transcript_168071~~R_Transcript_168071.p2 ORF type:complete len:191 (+),score=44.55,UBN2|PF14223.2|1.9e+02,UBN2|PF14223.2|4.2e-30,DUF4219|PF13961.2|1.3e-12,UBN2_2|PF14227.2|48,UBN2_2|PF14227.2|4.4e-10,UBN2_3|PF14244.2|2.6e-07 R_Transcript_168071:88-660(+)
ATGGCTTCAACTTTGCCAGCAGCAACAATCTCGATGCTAGCACCTCCAACTTTTGGAGGAGAAAACTATGATTATTGGTGCATAAAAATGAAGCTCTTTTTGAGAGCAAATGGACTATGGGAAGTTGTAGAGAAGGGTTTTGAGCAAAGAAAGGAGGGAGAACAATACACAAAAGCCCAAGAAAAAAAACTCACTGAACATGAGTTAAAAGATGCCAAAGCCTTGTCTTACATTTTGGGTGCTGTCACAGAGACCATTTTTCCCAGAATAATGAGAGCATCTTCTGCCAAGGAAGCATTGAATATTCTCCGAGAAGAATTCCAAGGAGATGAGAAAGTGAGAGCCATTCGGCTCAACACTTTAAGAAAGGATTTTGATAATATGAAGATGAAGGATGATGAAAATCTTAGGGGTTACACTTCTAAATTGCTAGAAGTTGTAAACCAAATGAAGATATGCGGGGAGGATATCCCGGATGTAAGAGTTGTTAACAAGATTTTGGGAAGCTTGGTGAAAAGGTTCAACACTATTGTCACTGTGATTGAAGAATCCAAGGACTTATCAAAACTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_168071.p2 GENE.R_Transcript_168071~~R_Transcript_168071.p2 ORF type:complete len:191 (+),score=44.55,UBN2|PF14223.2|1.9e+02,UBN2|PF14223.2|4.2e-30,DUF4219|PF13961.2|1.3e-12,UBN2_2|PF14227.2|48,UBN2_2|PF14227.2|4.4e-10,UBN2_3|PF14244.2|2.6e-07 R_Transcript_168071:88-660(+)
MASTLPAATISMLAPPTFGGENYDYWCIKMKLFLRANGLWEVVEKGFEQRKEGEQYTKAQEKKLTEHELKDAKALSYILGAVTETIFPRIMRASSAKEALNILREEFQGDEKVRAIRLNTLRKDFDNMKMKDDENLRGYTSKLLEVVNQMKICGEDIPDVRVVNKILGSLVKRFNTIVTVIEESKDLSKL*

Click here to download the sequence:
Link to NCBI Protein BLAST