Transcript Information: R_Transcript_168440.p1


Annotated TAIR IDAT2G05100.1
Annotated Gene Namephotosystem II light harvesting complex gene 2.1
Annotated Gene Symbol(s)LHCB2.1, LHCB2
Annotation TypeOrtholog
Chromosome Positionchr2:1823449-1824331 | Reverse length=265
E-Value5.9E-171
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.98487199395964
Replicate 20.67973634441253
Replicate 30.082398336676807
Condition 2: 8 Hour
Replicate 10.44039325444686
Replicate 20.40217413383427
Replicate 30.13058712676537
Condition 3: 24 Hour
Replicate 10.16516408077485
Replicate 20.71401917271653
Replicate 30.23619825201688


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_168440.p1 GENE.R_Transcript_168440~~R_Transcript_168440.p1 ORF type:5prime_partial len:278 (+),score=-40.26,Chloroa_b-bind|PF00504.17|5.8e-51 R_Transcript_168440:1-834(+)
AAAAACCAACCCAACCGCCGCCGCATCGCCCTCGTTAGAACGATGGCCGCGTCGGCGCTGCACCAGACCACCAGCTTCCTCGGCACCGCCCCTCGCCGGGATGAGCTCGTCCGCCGCGTCGGCGACTCCGGTGGCCGCATCACCATGCGCCGCACCGTCAAGAGCGCGCCCCAGAGCATCTGGTATGGACCTGACCGTCCCAAGTACCTGGGCCCGTTCTCGGAGCAGACGCCATCGTACCTGACCGGAGAGTTCCCGGGAGACTACGGGTGGGACACGGCGGGGCTATCGGCCGACCCGGAGACGTTCGCGAGGAACAGGGAGCTGGAGGTGATCCACTCGCGGTGGGCGATGCTGGGGGCGCTGGGCTGCGTCTTCCCGGAGATCCTGTCCAAGAACGGGGTGAAGTTCGGGGAGGCGGTGTGGTTCAAGGCCGGCGCGCAGATCTTCTCCGAGGGGGGGCTCGACTACCTGGGGAACCCCAACCTGGTGCACGCGCAGAGCATCCTCGCCATCTGGGCGGTCCAGGTGGTGCTCATGGGATTCGTCGAGGGCTACCGCGTCGGCGGCGGCCCGCTCGGCGAGGGCCTCGACAAGGTGTACCCAGGCGGCAGCTTCGACCCGCTCGGCCTCGCCGACGACCCGGAGGCCTTCGCGGAGCTCAAGGTGAAGGAGATCAAGAACGGCCGCCTCGCCATGTTCTCCATGTTCGGCTTCTTCGTCCAGGCCATCGTCACCGGCAAGGGCCCCCTCGAGAACCTCGCCGACCACCTCGCCGACCCCGTCAACAACAACGCCTGGGCGTACGCCACCAACTTCGTCCCCGGCAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_168440.p1 GENE.R_Transcript_168440~~R_Transcript_168440.p1 ORF type:5prime_partial len:278 (+),score=-40.26,Chloroa_b-bind|PF00504.17|5.8e-51 R_Transcript_168440:1-834(+)
KNQPNRRRIALVRTMAASALHQTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK*

Click here to download the sequence:
Link to NCBI Protein BLAST