Transcript Information: R_Transcript_169416.p1


Annotated TAIR IDAT4G01030.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:448336-450642 | Reverse length=768
E-Value4E-124
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.64452545744063
Replicate 20.6820832056142
Replicate 31.0353327727074
Condition 2: 8 Hour
Replicate 10.44959921513303
Replicate 20.28424849798117
Replicate 30.64094670269728
Condition 3: 24 Hour
Replicate 10.74580447208643
Replicate 20.71648439898768
Replicate 30.74195609108127


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_169416.p1 GENE.R_Transcript_169416~~R_Transcript_169416.p1 ORF type:5prime_partial len:708 (+),score=109.46,PPR_2|PF13041.2|1.4e+04,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|0.038,PPR_2|PF13041.2|11,PPR_2|PF13041.2|4.2e-07,PPR_2|PF13041.2|0.00018,PPR_2|PF13041.2|4.2,PPR_2|PF13041.2|3.8e-08,PPR_2|PF13041.2|4.5e-11,PPR_2|PF13041.2|4.8e-11,PPR_2|PF13041.2|0.0018,PPR_2|PF13041.2|37,PPR|PF01535.16|51,PPR|PF01535.16|1e+02,PPR|PF01535.16|26,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|3.2e-09,PPR|PF01535.16|0.024,PPR|PF01535.16|1.2,PPR|PF01535.16|4.5e-06,PPR|PF01535.16|5.4e-08,PPR|PF01535.16|5.3e-07,PPR|PF01535.16|8.5e+03,PPR|PF01535.16|0.0078,PPR|PF01535.16|1.7,PPR_1|PF12854.3|9.1e+02,PPR_1|PF12854.3|31,PPR_1|PF12854.3|1.4e-05,PPR_1|PF12854.3|23,PPR_1|PF12854.3|2.9e+03,PPR_1|PF12854.3|0.043,PPR_1|PF12854.3|3.9e-10,PPR_1|PF12854.3|3e-07,PPR_1|PF12854.3|49,PPR_1|PF12854.3|1.5e+02,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|9.5,PPR_3|PF13812.2|0.00029,PPR_3|PF13812.2|0.96,PPR_3|PF13812.2|79,PPR_3|PF13812.2|0.00072,PPR_3|PF13812.2|1.3e-05,PPR_3|PF13812.2|0.73,PPR_3|PF13812.2|0.4,PPR_3|PF13812.2|9.1e+03 R_Transcript_169416:2-2125(+)
AAGCTCAAGACCCCACACATGTTCGATGAAATGTCTTGCTCACTTACTTGGTATCCTAAAAAGATCACTTCTTTAAGCTTAGTTAAGCAAATGCATGCCCAGATGATGAAATTACCAAAAGGGGTAGTTTCGGATGATCCTTTTGCTGAGAATTTGATCACTTTCTACTTAAATTTTCATGATTTTCATTCAGCAGTAATGGTTTTCTTTCTGGGTTTCCGACGGAATTTCGTATTGTGGAGATCATTTTTGGAGGAATACAAGAGTTTGGGGGGTGACCCGATTGAGATTCTTGAGGTTTTCAGCGAGTTACATAGTAAAGGAGTGGACTTTGATAACAGAATTCTTACTGTTATGTTGAAACTTTGTGCTATTTTGATGGATAAATGGCTAGGAGTTGAAGTTCATGCTTGTTTGATCAAGAGGGTTTTTGAATTGGATGTTCATTCTAAGGGTGCTTTGATAAATTTTTATGGAAGGTGTTGGGGAATTGATTATGGACACAATATGTTTTATGAAATGCCTGAACCAGAAGTTCCTTTGTGGAATGTAGCAATTGTGGCTGCTCTTCAGAATGCAAGCCCAACGAAGGCCCTGCAATTGTTTCATGACATGCAGCTTTCATTTGCGAAGCCAGACATTTTCACAACTGCCAAAGCTATGCAAGCTTGTGTAAAGGGAAGGGCTCAGTCCGAAGGGAAGCAAATTCATGGGTATGTGTTTCGAAATGACATGGAAAGGGATTTATCGATATGCAATGGATTCATTAGCATGTACCCTAAGAACAACAAGGTAGAAATAGCAAGAAAGGTTTTCGATTCAGTAGAGAACCCCAATTTATCTTCATGGAACTCGATGATTTCTGGTTATGCGTCACTTGGTTATTTCGTTGAGGCAATGGAGCTATTCCATGAGATGGAGTCTTACAATGTGAAACAGAATACAGTAACATGGAATTGCCTTTTGTCCAGTCATCTGCAATATGGGCTATTTTATGAAGTTCTGAACATTCTAAAGAACATGTTGGTTGCGAAAGTGAAGCCTAACCCAGACTCCATCACTCCTGCGATTCAAGCAATCAGTGAATTGAATTTAGTGAAATCAGGAAAGGAAATTCATGGCTTTGTTTTGAGGCATGGACTTGAGTTTGACGAGTATGTACAAACAACATTGTTGGACATGTATGTGAAGATGGATCAATTGGTGAAAGCTCAAGCAGTATTTAACTTCATGAATACAATAAATATTGTTGCATGGAATTCTTTGATTTCTGGATATTCCTCGAAAGGGCTATTTGATGCTTCTGCGGATCTGATAAATCGAATGGAACAGGAAGGCATAAAACCAGATATAGTTACATGGAACTCTCTACTTTCCGGGTATTCACTGAATGGCCGTGTGAACGATGCTCTAGCAGTGATGGATAGAATGAAATCTTCAGGTTTGACACCTAATGTGGTTTCATGGACTGCCCTGATATCAGGATGTTCACAGAATGGAAAACACAATGAGGCCTTCAATTTCTTCCTCCAAATGCTAGAAGATGTTAAGCCTAACTCAGCCACAATCTCGAGCTTACTTCAAGCTTGTGCTGGTATGTCTTGGATACAGAAAGGCAAAGAGATACATTGTTGGTGCATAAGAAATGGGTTCCATGAGGATGTCCTAGTGGCAACATCTCTTATACAGATGTACATCAAGTCAGGTAGTCTAACCAGTGCCTCTGATATTTTCGACAGGATGAAGAATAAGACAGTTGCCACTTGGAATTGCATGATTATGGGTTTCGCGGTTTATAGCCAGGGGAAAGAGGGGATTATTTTGTTTCACTCTGCCCTTGATACACTCAAAGATCCTAATGGTCTAATATTTTCGATATGGGTATATGATCCTGGAGGATGCGACATGGGCAAATCGGTGAGAAAAGTGCTTAATCAGCAGCCACTCAAGTTCTGGTCAAATGGAAGAACAAATCAGTGGAAGAGTCTACTTGGGAAGTCTTCTATGATCTACTACAGAAGTATCTTCATTTTAATCCTTGAGGACAATGATTTTTTTGCAGGGGAAAGTTATGATACAGTTTGCAATATTAAGCTCATCATGTGCATGTCACGTGATAGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_169416.p1 GENE.R_Transcript_169416~~R_Transcript_169416.p1 ORF type:5prime_partial len:708 (+),score=109.46,PPR_2|PF13041.2|1.4e+04,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|0.038,PPR_2|PF13041.2|11,PPR_2|PF13041.2|4.2e-07,PPR_2|PF13041.2|0.00018,PPR_2|PF13041.2|4.2,PPR_2|PF13041.2|3.8e-08,PPR_2|PF13041.2|4.5e-11,PPR_2|PF13041.2|4.8e-11,PPR_2|PF13041.2|0.0018,PPR_2|PF13041.2|37,PPR|PF01535.16|51,PPR|PF01535.16|1e+02,PPR|PF01535.16|26,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|3.2e-09,PPR|PF01535.16|0.024,PPR|PF01535.16|1.2,PPR|PF01535.16|4.5e-06,PPR|PF01535.16|5.4e-08,PPR|PF01535.16|5.3e-07,PPR|PF01535.16|8.5e+03,PPR|PF01535.16|0.0078,PPR|PF01535.16|1.7,PPR_1|PF12854.3|9.1e+02,PPR_1|PF12854.3|31,PPR_1|PF12854.3|1.4e-05,PPR_1|PF12854.3|23,PPR_1|PF12854.3|2.9e+03,PPR_1|PF12854.3|0.043,PPR_1|PF12854.3|3.9e-10,PPR_1|PF12854.3|3e-07,PPR_1|PF12854.3|49,PPR_1|PF12854.3|1.5e+02,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|9.5,PPR_3|PF13812.2|0.00029,PPR_3|PF13812.2|0.96,PPR_3|PF13812.2|79,PPR_3|PF13812.2|0.00072,PPR_3|PF13812.2|1.3e-05,PPR_3|PF13812.2|0.73,PPR_3|PF13812.2|0.4,PPR_3|PF13812.2|9.1e+03 R_Transcript_169416:2-2125(+)
KLKTPHMFDEMSCSLTWYPKKITSLSLVKQMHAQMMKLPKGVVSDDPFAENLITFYLNFHDFHSAVMVFFLGFRRNFVLWRSFLEEYKSLGGDPIEILEVFSELHSKGVDFDNRILTVMLKLCAILMDKWLGVEVHACLIKRVFELDVHSKGALINFYGRCWGIDYGHNMFYEMPEPEVPLWNVAIVAALQNASPTKALQLFHDMQLSFAKPDIFTTAKAMQACVKGRAQSEGKQIHGYVFRNDMERDLSICNGFISMYPKNNKVEIARKVFDSVENPNLSSWNSMISGYASLGYFVEAMELFHEMESYNVKQNTVTWNCLLSSHLQYGLFYEVLNILKNMLVAKVKPNPDSITPAIQAISELNLVKSGKEIHGFVLRHGLEFDEYVQTTLLDMYVKMDQLVKAQAVFNFMNTINIVAWNSLISGYSSKGLFDASADLINRMEQEGIKPDIVTWNSLLSGYSLNGRVNDALAVMDRMKSSGLTPNVVSWTALISGCSQNGKHNEAFNFFLQMLEDVKPNSATISSLLQACAGMSWIQKGKEIHCWCIRNGFHEDVLVATSLIQMYIKSGSLTSASDIFDRMKNKTVATWNCMIMGFAVYSQGKEGIILFHSALDTLKDPNGLIFSIWVYDPGGCDMGKSVRKVLNQQPLKFWSNGRTNQWKSLLGKSSMIYYRSIFILILEDNDFFAGESYDTVCNIKLIMCMSRDS*

Click here to download the sequence:
Link to NCBI Protein BLAST