Transcript Information: R_Transcript_16946.p1


Annotated TAIR IDAT4G38100.1
Annotated Gene Nameunknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:17887033-17888177 | Reverse length=193
E-Value3.4E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.9384449326405
Replicate 28.5927919853177
Replicate 39.863755334998
Condition 2: 8 Hour
Replicate 15.6639901123521
Replicate 27.4801526443824
Replicate 38.3975422798943
Condition 3: 24 Hour
Replicate 110.130847317563
Replicate 29.1831504989236
Replicate 39.3470624997426


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_16946.p1 GENE.R_Transcript_16946~~R_Transcript_16946.p1 ORF type:5prime_partial len:281 (+),score=36.28,CAAD|PF14159.2|6.3e-26 R_Transcript_16946:2-844(+)
CTCCACACAGGGGCTGGAAAAACCCTAGCCGGTAAGCCACAAATTTTACTTCCATTCCACAACTCGCCCTTAAAAACCACTACCATTAGTGAAGCGTATCTTCGTGTTGGTCCTTTCCTCTCCCTTTCCGTAGACATTTGCCGATTGATTCTAGAAGGTCCGAGAAGGAGGAGCTTGAAAAAAAAAAAAAATATGGAGCTTTGCTGTACTACTCGTGCTCTCTCAACGCCTTCACTTCAACCTCACCACCGTCTTTTCCCCAAAGCCCCTCGTCTTCAGTTCAATCACTCCGGATCTCTCAAGCACCGAACCCGTTTCTTAGGAGCGCTGTGTCACACAAGGACATTGTTGAGGGCAGCATCATCCGACGAGACTTCGAGTGCCGGTAGTAACTTTTCAGGGGAGAAAACCGACTCTATTGCAACTCTTGAAGATGTTCCCTCGGCGGAGAGGAACGTCACTCTGGATGGGGTATCACCAGTCAACCAAAGTGTGTATAATGAGACCAGGCAAGAAGAGTCATCGGAAAATGAATCTTCCGAGGACAACCCTATGCAGCCCCTTAACGAGCTTTTGGACAAGTTTGACATAAATTTGGAGTCTGAAGATTCATACACAATTTTCCTATATGGTGGTGGTGCCTTGGTGGCTCTGTGGTTGCTTTCGGCTGTTGTTGGTGCAATCGATTCTATCCCAGTGTTTCCAAAATTGATGGAAGTCGTTGGTCTAGGGTACTCCCTATGGTTCACCACGCGATATCTGCTATTCAAGAGAAATAGAGAAGAGCTAGGTTCCAAAATTGAAGAGCTCAAGCGAGAGGTTTTGGGTTCAGGAGACAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_16946.p1 GENE.R_Transcript_16946~~R_Transcript_16946.p1 ORF type:5prime_partial len:281 (+),score=36.28,CAAD|PF14159.2|6.3e-26 R_Transcript_16946:2-844(+)
LHTGAGKTLAGKPQILLPFHNSPLKTTTISEAYLRVGPFLSLSVDICRLILEGPRRRSLKKKKNMELCCTTRALSTPSLQPHHRLFPKAPRLQFNHSGSLKHRTRFLGALCHTRTLLRAASSDETSSAGSNFSGEKTDSIATLEDVPSAERNVTLDGVSPVNQSVYNETRQEESSENESSEDNPMQPLNELLDKFDINLESEDSYTIFLYGGGALVALWLLSAVVGAIDSIPVFPKLMEVVGLGYSLWFTTRYLLFKRNREELGSKIEELKREVLGSGDN*

Click here to download the sequence:
Link to NCBI Protein BLAST