Transcript Information: R_Transcript_16988.p1


Annotated TAIR IDAT1G78570.1
Annotated Gene Namerhamnose biosynthesis 1
Annotated Gene Symbol(s)RHM1, ROL1, ATRHM1
Annotation TypeOrtholog
Chromosome Positionchr1:29550110-29552207 | Forward length=669
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 198.484864884571
Replicate 276.395427885079
Replicate 386.366884714382
Condition 2: 8 Hour
Replicate 149.733512359516
Replicate 251.976627568622
Replicate 370.697161957033
Condition 3: 24 Hour
Replicate 1109.44922023519
Replicate 2114.03385707869
Replicate 395.041277684883


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_16988.p1 GENE.R_Transcript_16988~~R_Transcript_16988.p1 ORF type:complete len:675 (+),score=138.69,GDP_Man_Dehyd|PF16363.1|5.2e-71,GDP_Man_Dehyd|PF16363.1|0.00014,Epimerase|PF01370.17|6.4e-55,Epimerase|PF01370.17|1.9e-11,RmlD_sub_bind|PF04321.13|1.8e-15,RmlD_sub_bind|PF04321.13|1.4e-13,3Beta_HSD|PF01073.15|6.2e-24,3Beta_HSD|PF01073.15|0.013,Polysacc_synt_2|PF02719.11|2.3e-19,Polysacc_synt_2|PF02719.11|0.00026,NAD_binding_4|PF07993.8|3.7e-19,NAD_binding_4|PF07993.8|0.13 R_Transcript_16988:404-2428(+)
ATGTCTACATACACCCCAAAAAACATCCTCATTACTGGTGCGGCGGGATTCATTGCATCCCATGTCGCGAACCGGCTCATCAGGAGTTACCCGGAGTACAAGATTGTCGTGCTCGACAAGCTTGACTATTGCTCAAACCTGAAGAACCTGCGTCCCTCTCAATCGTCCCCAAACTTCAAATTTGTCAAGGGGGACATTGCTAGTGCCGATCTTGTGAACTACTTGCTTATCACTGAATCCATTGATACAATTATGCACTTTGCTGCTCAAACCCATGTTGATAATTCTTTTGGTAATAGCTTTGAGTTTACCAAGAACAACATTTATGGGACTCACGTCCTCCTAGAAGCCTGTAAGGTCACTGGTCAGATTCGGAGGTTTATCCATGTGAGTACTGATGAAGTCTATGGGGAGACAGATGAGGATGCCGTTGTCGGGAACCATGAGGCTTCGCAGCTTCTCCCAACAAACCCTTACTCTGCAACAAAAGCTGGTGCTGAAATGCTTGTAATGGCTTATGGCAGATCATACGGTTTGCCTGTCATTACAACCCGAGGTAACAATGTGTATGGACCTAATCAATTTCCCGAGAAATTGATCCCAAAGTTTATTCTTTTGGCCATGAGGGGAAAGCCTCTCCCAATTCATGGAGATGGAGCTAATGTGCGAAGCTATCTCTACTGTGAGGATGTTGCTGAGGCATTTGAGTGTATTCTCCACAAGGGAGAAGTTGGTCATGTGTACAACATTGGTACGAAGAAGGAAAGGAGAGTGATTGATGTTGCTCGGGACATATGCAAACTGTTCTCAATGGATCCTGAGGCCAGTATTAAGTTTGTTGAGAACCGGCCATTTAATGACCAGAGGTATTTCCTTGATGATCAGAAACTGAAAAACTTAGGATGGTCAGAGCGCACCACTTGGGAAGAGGGGCTGAAGAAGACAATGGAGTGGTATACCAGCAACCCTGATTGGTGGGGTGATGTCTCAGGAGCGTTGCTTCCACACCCTCGAATGTTGATGATGCCTGGTGGTATTGAGAGACATTTTGAAGAATCTGATGACAGCAAGTCTGGCTCTTCGGAGTTCCCCAACACTCAGACTCGCATGGTGGTACCTGTTTCTAAGAGCAGCACTTCTCCTCGTAAATCATCTTACAAGTTCCTGATCTATGGTAGAACTGGTTGGATCGGTGGTCTACTTGGTCAGTTTTGTGAGAAGCAAGGTATTCCTTATGAGTATGGAAAAGGTCGTCTGGAGAACCGAGCAACTCTTATTGCAGATATCCAGAATGTCAAGCCTACTCATGTCTTCAATGCTGCTGGTGTGACTGGTAGACCAAATGTCGATTGGTGTGAATCTCACAAAACAGAGACAATTCGCACCAATGTTGCTGGTACATTGACTTTGGCTGACGTCTGCAAGGAGCACGGCATTCTTATGATCAACTATGCAACTGGGTGCATATTTGAATATGATGCTACCCATCCACTTGGTTCTGGAATTGGGTTCAAGGAGGAAGACAAACCCAATTTCACTGGATCTTTCTACTCAAAGACTAAAGCCATGGTGGAGGAGCTTCTGAAAGAGTTTGACAATGTTTGCACCCTTAGGGTTCGGATGCCCATCTCCTCCGACCTCAACAACCCACGTAATTTTATCACAAAGATCTCTCGCTACAATAAGGTGGTTAACATTCCCAACAGCATGACCGTCTTGGATGAGCTCCTACCTATTTCCATCGAGATGGCAAAGAGGAACCTCAGGGGAATTTATAACTTCACTAATCCAGGAGTGGTCAGCCACAACGAGATTCTTGAAATGTACAAGAATTACATGGACCTGAACTACACCTGGAAAAACTTCACCCTTGAAGAGCAAGCCAAGGTTATCGTTGCTCCAAGAAGCAATAATGAGATGGATGCCTCCAAGTTGAAAGCAGAATTCCCAGAATTGCTAAGCATCAAGGACTCACTGATCAAGTATGTCTTTGAGCCAAACAAGAAGACAAATTATTCTGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_16988.p1 GENE.R_Transcript_16988~~R_Transcript_16988.p1 ORF type:complete len:675 (+),score=138.69,GDP_Man_Dehyd|PF16363.1|5.2e-71,GDP_Man_Dehyd|PF16363.1|0.00014,Epimerase|PF01370.17|6.4e-55,Epimerase|PF01370.17|1.9e-11,RmlD_sub_bind|PF04321.13|1.8e-15,RmlD_sub_bind|PF04321.13|1.4e-13,3Beta_HSD|PF01073.15|6.2e-24,3Beta_HSD|PF01073.15|0.013,Polysacc_synt_2|PF02719.11|2.3e-19,Polysacc_synt_2|PF02719.11|0.00026,NAD_binding_4|PF07993.8|3.7e-19,NAD_binding_4|PF07993.8|0.13 R_Transcript_16988:404-2428(+)
MSTYTPKNILITGAAGFIASHVANRLIRSYPEYKIVVLDKLDYCSNLKNLRPSQSSPNFKFVKGDIASADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGKPLPIHGDGANVRSYLYCEDVAEAFECILHKGEVGHVYNIGTKKERRVIDVARDICKLFSMDPEASIKFVENRPFNDQRYFLDDQKLKNLGWSERTTWEEGLKKTMEWYTSNPDWWGDVSGALLPHPRMLMMPGGIERHFEESDDSKSGSSEFPNTQTRMVVPVSKSSTSPRKSSYKFLIYGRTGWIGGLLGQFCEKQGIPYEYGKGRLENRATLIADIQNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCKEHGILMINYATGCIFEYDATHPLGSGIGFKEEDKPNFTGSFYSKTKAMVEELLKEFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIYNFTNPGVVSHNEILEMYKNYMDLNYTWKNFTLEEQAKVIVAPRSNNEMDASKLKAEFPELLSIKDSLIKYVFEPNKKTNYSA*

Click here to download the sequence:
Link to NCBI Protein BLAST