Transcript Information: R_Transcript_169900.p1


Annotated TAIR IDAT1G52640.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19608857-19610428 | Reverse length=523
E-Value5.5E-214
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5886836386515
Replicate 20.89428686958307
Replicate 31.4422760708689
Condition 2: 8 Hour
Replicate 10.544130332161
Replicate 20.49690848535968
Replicate 30.94119462476081
Condition 3: 24 Hour
Replicate 10.72274578309439
Replicate 21.0210768004897
Replicate 31.3375819530882


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_169900.p1 GENE.R_Transcript_169900~~R_Transcript_169900.p1 ORF type:5prime_partial len:540 (+),score=85.01,PPR_2|PF13041.2|2,PPR_2|PF13041.2|0.081,PPR_2|PF13041.2|0.45,PPR_2|PF13041.2|1.2e-09,PPR_2|PF13041.2|8.7e-15,PPR_2|PF13041.2|3e-08,PPR_2|PF13041.2|9.9e-14,PPR_2|PF13041.2|2.2e-11,PPR_2|PF13041.2|3.2e-11,PPR_2|PF13041.2|0.0011,PPR_1|PF12854.3|0.8,PPR_1|PF12854.3|0.19,PPR_1|PF12854.3|0.00034,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|3.4e-05,PPR_1|PF12854.3|1.9e-08,PPR_1|PF12854.3|0.0084,PPR_1|PF12854.3|0.0083,PPR_1|PF12854.3|0.0096,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.099,PPR_3|PF13812.2|7.4e-05,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|0.00078,PPR_3|PF13812.2|0.0011,PPR_3|PF13812.2|0.013,PPR|PF01535.16|69,PPR|PF01535.16|0.1,PPR|PF01535.16|6.7e+02,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.00017,PPR|PF01535.16|0.021,PPR|PF01535.16|4.7e-06,PPR|PF01535.16|0.93,PPR|PF01535.16|0.0046,PPR|PF01535.16|0.03 R_Transcript_169900:1-1620(+)
CTCCAAATGGCCATTGTAACAGTGTACGCCCGAAACAGAGCAACCACCACAGCGTCCCTCTTTCGCTTCCTTTCTCATTCCTTCTCCCACTCTCACCCTTCTCTCTCCTTCTCATCAAGCTCACCATCATCGTCATCACCATCACCTGACGATGTCAACGACATCTCTCGAGTTATTAGCGACTTCCGTTTACCCCAACACGACATTGAGCTTGCACTCGCCCCATTCTCTTCCAAAATCACCACAAATTTGGTTGACCAAGTTCTCAAACGAACCAAAAATCTGGGCTTTTCGGCCCACAGATTCTTCTTATGGGCTAAAACATTGGATGGGTTTCAACCCAATGTCAATAGCTACAAGATTCTTATTGATGTTTTGGGTAGTGCCAAACAATTCCCTTTGATATGGGATTTACTTGCTGAGGTCAAAGAAAGTCAGGAATGTGAGCTTTGCCCAGAATTTTTCTGGGTAATTTTTGATGCTTATTGTAGAGCAAACTTACCTAATGATGCAATTAGAGCTTTAAATAGAATGGCTGATTATGGGTTAAGTCCAACCTTGAATGACCTTGATCATTTGTTGTATTTGTTGTGTCGGAGGAAGTTTGTGAGACATGGGCAAGAGTTTTTCGATAAAGTGAAGGGCCAATTTGCCCCTAGTGTGAAAAGTTACAGTATTTTAATAAGGGGTTGGGGTGATATTGGTGAACCTGACGTTGCACGCAAGGTGTTCGATGAAATGTCTCAGAGAGGGTGTGTAGTCGATGTTCCTGCTTATAATGCTTTGTTGGAAGCCTTATGTAATGGCTGGTGTTTGGATGAGGCTTATGCAATGTTTAGAGATATGGGTTCTAAGGGTTTACATCCTGATGCTTTCACTTATTCGATATTTATTCGATCATATTGTCAAAGAGATAATATTCATTCCATCTTTAGGGTGCTTGATAGAATAAAGAGGTACAATCTGGTGCCTAATGTGTATACTTACAACTGTGTAATTAAGAAATTGTGTGCAAGTGACAAGGTTGAAGAGGCTTACTTGCTTCTTGATGAGATGATAAAAGCAGGGGTTAGTCCAGATACTTGGAGTTACAATGCCATTATGGGTTACCATTGTGATCGTTGTGAGGTTAATAGGGCTCTCGGATTGCTGTCTATGATGGAGAAGGAACAATGCAAGCCTGACAGGCATACATATAATATGTTGCTGAAAATGTTAATTAGGATAGGTAGGTTTGATAGGGTTGATGAGGTATGGGATCGTATGCCATTAAGGGGCTTCTATCCTTCGGTTTCAACATATGCCGTTATGATCCATGGCTTTCTTAAGAAGAAAGGTAAACTAGAGGAGGCATGTAAGTACTTTGAGATAATGATTGATGAAGGGATCCCACCTTATTGTTCAACTATCCAGGAGTTGAGGAATAGACTTGTGGGGCTGGGATTTATGGAGCAGATAGACATACTGGCTACTAAGATGGAGGCTAGTAGTTCTTCTGCAATTAAAGAACTGTCAAAAGCAATGCGAGGTCGTAGGTCTAATCGGAGGAGGAGCAAAGAAGAAAGCTCAGAACTTAGTGAAGAAGAAGATGAATGGCCGTTCAAGCCTAATACAACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_169900.p1 GENE.R_Transcript_169900~~R_Transcript_169900.p1 ORF type:5prime_partial len:540 (+),score=85.01,PPR_2|PF13041.2|2,PPR_2|PF13041.2|0.081,PPR_2|PF13041.2|0.45,PPR_2|PF13041.2|1.2e-09,PPR_2|PF13041.2|8.7e-15,PPR_2|PF13041.2|3e-08,PPR_2|PF13041.2|9.9e-14,PPR_2|PF13041.2|2.2e-11,PPR_2|PF13041.2|3.2e-11,PPR_2|PF13041.2|0.0011,PPR_1|PF12854.3|0.8,PPR_1|PF12854.3|0.19,PPR_1|PF12854.3|0.00034,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|3.4e-05,PPR_1|PF12854.3|1.9e-08,PPR_1|PF12854.3|0.0084,PPR_1|PF12854.3|0.0083,PPR_1|PF12854.3|0.0096,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.099,PPR_3|PF13812.2|7.4e-05,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|0.00078,PPR_3|PF13812.2|0.0011,PPR_3|PF13812.2|0.013,PPR|PF01535.16|69,PPR|PF01535.16|0.1,PPR|PF01535.16|6.7e+02,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.00017,PPR|PF01535.16|0.021,PPR|PF01535.16|4.7e-06,PPR|PF01535.16|0.93,PPR|PF01535.16|0.0046,PPR|PF01535.16|0.03 R_Transcript_169900:1-1620(+)
LQMAIVTVYARNRATTTASLFRFLSHSFSHSHPSLSFSSSSPSSSSPSPDDVNDISRVISDFRLPQHDIELALAPFSSKITTNLVDQVLKRTKNLGFSAHRFFLWAKTLDGFQPNVNSYKILIDVLGSAKQFPLIWDLLAEVKESQECELCPEFFWVIFDAYCRANLPNDAIRALNRMADYGLSPTLNDLDHLLYLLCRRKFVRHGQEFFDKVKGQFAPSVKSYSILIRGWGDIGEPDVARKVFDEMSQRGCVVDVPAYNALLEALCNGWCLDEAYAMFRDMGSKGLHPDAFTYSIFIRSYCQRDNIHSIFRVLDRIKRYNLVPNVYTYNCVIKKLCASDKVEEAYLLLDEMIKAGVSPDTWSYNAIMGYHCDRCEVNRALGLLSMMEKEQCKPDRHTYNMLLKMLIRIGRFDRVDEVWDRMPLRGFYPSVSTYAVMIHGFLKKKGKLEEACKYFEIMIDEGIPPYCSTIQELRNRLVGLGFMEQIDILATKMEASSSSAIKELSKAMRGRRSNRRRSKEESSELSEEEDEWPFKPNTT*

Click here to download the sequence:
Link to NCBI Protein BLAST