Transcript Information: R_Transcript_169967.p1


Annotated TAIR IDAT5G18390.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6090954-6092333 | Forward length=459
E-Value1.9E-209
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.107120921382
Replicate 25.4947764919248
Replicate 38.1392025075691
Condition 2: 8 Hour
Replicate 18.2835160140681
Replicate 210.133761345048
Replicate 312.204061608601
Condition 3: 24 Hour
Replicate 112.748909971129
Replicate 210.464516452338
Replicate 310.990421927889


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_169967.p1 GENE.R_Transcript_169967~~R_Transcript_169967.p1 ORF type:complete len:470 (+),score=73.54,PPR_2|PF13041.2|1.2e+02,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|4.3e-14,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|3.9e-07,PPR_2|PF13041.2|1.7e-08,PPR_2|PF13041.2|61,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|0.034,PPR|PF01535.16|8.4e+02,PPR|PF01535.16|1.4,PPR|PF01535.16|0.0037,PPR|PF01535.16|9.3e-08,PPR|PF01535.16|1.1,PPR|PF01535.16|0.01,PPR|PF01535.16|0.051,PPR|PF01535.16|0.0019,PPR|PF01535.16|0.005,PPR|PF01535.16|8.6e+03,PPR_1|PF12854.3|1,PPR_1|PF12854.3|0.29,PPR_1|PF12854.3|2.7e-11,PPR_1|PF12854.3|56,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|0.0025,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|0.27,PPR_3|PF13812.2|15,PPR_3|PF13812.2|5.6e+03,PPR_3|PF13812.2|0.0031,PPR_3|PF13812.2|8.9e-05,PPR_3|PF13812.2|7,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|50,PPR_3|PF13812.2|0.00022,PPR_3|PF13812.2|0.083 R_Transcript_169967:15-1424(+)
ATGCTACGAAATGCGAGATCCATGCTTCGAGTCTCCCTCCTCCATTCCCTTCCTGTATCGCCATCTCTAAAACCACCATTACTATCTCTCTACCCTCTCTTCCATATCAAAAGCTTAATCGCCCCCTTCTCCACCAGAACAACCACCTCCAATGATGACTACTTTGCTGCCATCCACCACATCTCCAACATAGTCCGCCGTGACATCTACCTTGAGCGAACCCTAAACAAGCTCCGAATCTCTGTCACCAATGAGCTTGTTTACCGTGTCCTTCGTAGTTGCTCCCGCCATGGTATCCAGTCCTTTCGCTTCTTCAATTGGGCTCGATCACAGTCTCTATCCACCTACTTCCCCACCGCCATCGAGTACGAGGAGCTCATCAAAACCCTAGCCCGAACCCGCCACTGGGAGACCATGTGGAAGGTCCTCCACCAGCTTGTCAAGGAATCTTCCTTGACTTTCTCTACTGAGATAATTGAGTTTGTAATTCGTGAGTATGGTACCAATGGTCTTGTTGACGAGGCGGTTAAGGTTTTCAATACCTGCACTAAGGTTTTCCATTGCGAGCAAACTGTTGGGGTTTACAATGCCTTGTTATTTGCGTTGTGTGAGGTGAAGAATTTTCAGGGGGCTTATGCCTTGATTAGGAGAATGATTCGGAAGGGGACTAGCCCAAATAAGGAGACTTATTCAATACTTGTTAATGCCTGGTGTAAGGCTGGGAAGTTGAAGGAGGCTCAGGAGTTTTTAGAGGAGATGAGTAGAAAAGGGTTTAACCCTCCTGTTCGAGGTCGTGATTTACTGATTGATGGGCTGTTAAATGCTGGGTATATTGAGTCTGCAAAGGGTCTTGTTACTAAGATGGCAAATGAAGGGTTTGTGCCGGATATAAGGACGTTTAATTCGCTGTTGGAAGCTATTTGCAAGTCAGGGGAGGTTGAGTTTTGCATCGGTTTGTATAACGATGTGTGTCGATTGGGCCTTTGTCCCGACATTGAGACCTACAAGATCATGATCCCCATTGTTGCCAAGTTGGGTAAGATGGATGAGGCATTTAGGCTGCTGCATTGCTCCATCGAGGAGGGGCATAAGCCCTTCTCAGGTTTATATGCCCCGATTTTGAAAGCATTGTCTAGGGCTGGGCAGTTTGATGATGCTTTTAGCTTTTTCAGTGATATGAAGCTGAGAGGCCACCCTCCAAATCGGCCTGTTTATACAATGCTGATCAGGATGTGTGCTCGTGGGGGTAGATTTGTGGAGGCTGCAAATTACTTGGTGGAGATGACGGAGCTGAATTTACCACCTTTGTCAAGGAGCTTTGATATGGTTACTGATGGATTGAAGAATTGTGGGAAGCATGACCTTGCCAAAAGGATAGAGCAGCTAGAGGTGTCTCTAAGAGGTAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_169967.p1 GENE.R_Transcript_169967~~R_Transcript_169967.p1 ORF type:complete len:470 (+),score=73.54,PPR_2|PF13041.2|1.2e+02,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|4.3e-14,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|3.9e-07,PPR_2|PF13041.2|1.7e-08,PPR_2|PF13041.2|61,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|0.034,PPR|PF01535.16|8.4e+02,PPR|PF01535.16|1.4,PPR|PF01535.16|0.0037,PPR|PF01535.16|9.3e-08,PPR|PF01535.16|1.1,PPR|PF01535.16|0.01,PPR|PF01535.16|0.051,PPR|PF01535.16|0.0019,PPR|PF01535.16|0.005,PPR|PF01535.16|8.6e+03,PPR_1|PF12854.3|1,PPR_1|PF12854.3|0.29,PPR_1|PF12854.3|2.7e-11,PPR_1|PF12854.3|56,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|0.0025,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|0.27,PPR_3|PF13812.2|15,PPR_3|PF13812.2|5.6e+03,PPR_3|PF13812.2|0.0031,PPR_3|PF13812.2|8.9e-05,PPR_3|PF13812.2|7,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|50,PPR_3|PF13812.2|0.00022,PPR_3|PF13812.2|0.083 R_Transcript_169967:15-1424(+)
MLRNARSMLRVSLLHSLPVSPSLKPPLLSLYPLFHIKSLIAPFSTRTTTSNDDYFAAIHHISNIVRRDIYLERTLNKLRISVTNELVYRVLRSCSRHGIQSFRFFNWARSQSLSTYFPTAIEYEELIKTLARTRHWETMWKVLHQLVKESSLTFSTEIIEFVIREYGTNGLVDEAVKVFNTCTKVFHCEQTVGVYNALLFALCEVKNFQGAYALIRRMIRKGTSPNKETYSILVNAWCKAGKLKEAQEFLEEMSRKGFNPPVRGRDLLIDGLLNAGYIESAKGLVTKMANEGFVPDIRTFNSLLEAICKSGEVEFCIGLYNDVCRLGLCPDIETYKIMIPIVAKLGKMDEAFRLLHCSIEEGHKPFSGLYAPILKALSRAGQFDDAFSFFSDMKLRGHPPNRPVYTMLIRMCARGGRFVEAANYLVEMTELNLPPLSRSFDMVTDGLKNCGKHDLAKRIEQLEVSLRGN*

Click here to download the sequence:
Link to NCBI Protein BLAST