Transcript Information: R_Transcript_170187.p4


Annotated TAIR IDAT5G52410.2
Annotated Gene NameINVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21275981-21279293 | Forward length=761
E-Value6E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0562135454931
Replicate 22.9610167253754
Replicate 33.3283293943128
Condition 2: 8 Hour
Replicate 13.76705614573
Replicate 25.1602035018121
Replicate 34.4215461767609
Condition 3: 24 Hour
Replicate 12.9433086189364
Replicate 23.4873699955186
Replicate 34.5833227763161


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_170187.p4 GENE.R_Transcript_170187~~R_Transcript_170187.p4 ORF type:complete len:234 (+),score=58.59 R_Transcript_170187:1911-2612(+)
ATGACAGATAATAGAGGTGCAGCTATGGTCCAAACCCCTGTTGTTCACTACACAACTCCTGCAACTTCATTCGCTACTTATCAACCCAACAAGATGGCTGATCTTGTTCGCAATCGAGCCATTGCTATGATGGAGGAGACTTTGATCCAAAAGTTGCAGGTTACCCGCTATCATGAGGTGCTCCATGTGCAAGAAGAGGCCTCCATAGTTTATGCTGACATCCGATCTTTGAAAGGAGATCCCACTACTCTTCAAGCGATTGTCGATGACTATGTAGCAGAAGTACAGGCATTTCTTTTGATGGAGAAGCAAACTACAAGCAGACGTCCTAGTAACAAAGTGTTAGAGGAACGCTCCAAGGTTGAGGCGGACTTGCAGCTAGCCAGATCTTCATTTGATGCACTTCGACGGGAGCATGAGGGCTGCCAACAGGAGCTCGAAGCGGTGCAAAGAGAGAGAGTTTCTTTGGAGGAGTCTTTGCGCAATCTATGCGAGAGAGAGTCGTCTTTGAAAGAACGACTCCAAAGCAAGCTTGAAGCAGCCACTGCAGCTAAAGCTGAGATTGATTCCTCTGAAGAGCAACTGAGCAGACTTGATTCTACTCCTACCATATCTGAGAAGCAGGTCAAGGACATCGAGGAGCTTCGTAACTTACTGGAGCAAAGGCGAAAGGGGCTCACTCCAAGCAAGAGTTGCAAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_170187.p4 GENE.R_Transcript_170187~~R_Transcript_170187.p4 ORF type:complete len:234 (+),score=58.59 R_Transcript_170187:1911-2612(+)
MTDNRGAAMVQTPVVHYTTPATSFATYQPNKMADLVRNRAIAMMEETLIQKLQVTRYHEVLHVQEEASIVYADIRSLKGDPTTLQAIVDDYVAEVQAFLLMEKQTTSRRPSNKVLEERSKVEADLQLARSSFDALRREHEGCQQELEAVQRERVSLEESLRNLCERESSLKERLQSKLEAATAAKAEIDSSEEQLSRLDSTPTISEKQVKDIEELRNLLEQRRKGLTPSKSCK*

Click here to download the sequence:
Link to NCBI Protein BLAST