Transcript Information: R_Transcript_17042.p1


Annotated TAIR IDAT4G31880.1
Annotated Gene NameLOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:15419435-15423939 | Reverse length=873
E-Value1.4E-181
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 145.885634364526
Replicate 232.321718842847
Replicate 336.279594394794
Condition 2: 8 Hour
Replicate 131.225592479894
Replicate 233.901181570543
Replicate 341.944121322581
Condition 3: 24 Hour
Replicate 152.922714330679
Replicate 240.24289191577
Replicate 347.03062849482


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_17042.p1 GENE.R_Transcript_17042~~R_Transcript_17042.p1 ORF type:complete len:901 (+),score=280.50 R_Transcript_17042:491-3193(+)
ATGGAAAAAGAGCTGGAAAAACATCTGTTAGAAGCTGGAAACGCTCTTCTCTCTCCTCCTTCTTCAGTCAATGAACTTCTTTCTTTACTCGACCGGATTGAAGCTTATCTCACCAGAGTAGAGCAGTCCCCTTCTGATTCAATGAAGAAAGCGCTTTCTCCGTCAATGAAAGCACTAATTGCAGACGACCTCTTGAAACATTCTAACATTGATGTGAAAGTTGCTGTAGCTGCATGTATCAGTGAGATAACAAGGATTACGGCTCCAGATGCTCCGTACGAGGATGATCAAATGAAGGAGGTGTTTCAATTGATTGTATCGTCTTTTGAGAACCTGGATGACAAATCCAGTCCATCATTCATCAAGAGGACTTGTATCCTTGAGACAGTAGCAAAAGTCAGATCATGTGTGGTGATGCTTGATCTTGAATGTGACGGATTAATTGTTGAAATGTTTCAACACTTCTTTAGATCTATAAGGGATGATCACCCAGAGAGTGTTTTTTCTTCCATGGAGACCATTATGACCCTTGTCTTGGAAGAAAGTGAGGATATATCAATTGATCTGCTTTCATCAATTCTAGATTTTTTAAAAACAGACAACAAGGAAGTCCTCCCAATTGCACGTGAACTGGGGGAGAAAGTGATAGAAAAATGTGCTAGCAAGCTTAAACCATACTTGTTACCAGCTGTGAAGTCTCGGGGTGCTTCTCTAGATGATTATAGCAAGGTTGTTGCAAATGTTTGCCAAACAGGAACTGAAGCTGTTGAGCCTGGTGATGAGGATGCTGCAAGAAAAAATTTGGCTGACGGAAGTGAGTTGGCCAACCCACCTCAAGAAAAGGCAGTTGAGGTAGCTATGGGAACACTAGATGATGCGCCACCTTCTGAGGAAGTGGGTCCAACCACAGTTCCATCCCCAAAGTCTGTTATGAGCAATGGTAGCCTCCAGAAGGAGATTGAGGACACATCGGCAGGTAATGATAATTTGAAGGAGGCCGATCATGATACTCATGATCAGGTTAAAGCTGATTTAGAGCCGGACAAGACTAATGCTGGGAGTTTGGATGCTGAAGAACCAGAAAAGTTGCATTCTAAGCCCGAAAAGTCTAACCGGCGAAAAGGGAGGAAAACAACTGCTTTGAAGAGCTCACCAGAACCTTCTGAGCCTTCCCTTACGGATGATATGAAGGAGTCAGTAAAGGTGTCTGGCCCTCAAGAGAAAGATGGCAGGGATGTTGACAGTGTTGTAAATGAGGATGCTGTGGCTGCTGCTGCAGAACCTTCTGAAAATGAGAAAGAGTCTAACCCTCCAATTTCCTCGCCAAAGACATCAGATAATGAGCCCGACCATGCATCCTCCCCGTCAATGAGTGAAACCCTTGCTGATGAAATTCGTTCTAAGAAGGCTGGGCGAGCAAAAAAGAAAGATGACTTGGTGCAACAAAGTGAGCCGGTAGGTGATGTGGATTCTAAGAAGGAATCTGATACAAAGAAGACACCCGAAGAATCTGGTATTCCAGAGTCCAAATCGCATAAGCGCTCTGGCAAGAAGGCATCTACTGGACAGTCTGGACTGGATAAGGAAGATAAGATTTCTAGTCTTGTCGATGCATCAAAAAAGGAAGATGAAAATACAAGTGAGCTGGATGCAAAATCGACAAAACAGTCGGGGAAGAAAGCTGAAGTGGTTAGTAACCAACATGACGATAAAAAGAAAAAAGGGCAAGTCAAAGGGACTCCAGCCAAAGGTCTTGCAAAAACTCCACCCAAAGACTCGGGAAAAAAACCTTTGCCTAAGTCAACTGGGAAATCAACGAAAGACGAAAGTGATGTGGAGAAAGCATCTACAAGTTCCAAGAGGAAGCGCAGCCAAAGTGAAGGAAAGGCCACCGGGACTAAAGGTTATGGTGAAGAAATGGTTGGTGAAAGAGTTCGAGTTTGGTGGCCAGATGACAAAAAATACTATAAAGGGGTTGTGAAGTCCTATGATCCTAAAGCAAAGAGGCACACGGTCAATTACGATGATGGTGATGTAGAGTACTTGATACTTGCTAAGGAAAAGTTTGAGATTCTTAAAGATGAAGCCGAGGCTGTTCAGGGAAATACGAGTGATGGTGAAAGTCCTGATGAATCCTCAGAAACGCCGAAGGGAAAGAAAGCAAAGACTAGTTCAGACCTAGTGAAGCGTGGGAAGACTGGAAGCTCTGCAAAGAAAGGGGGAGCATCCTCCAGCAAATCAAAAGCTACACCCAAGTCTGGTAGTAAGCAGAAGGACGACAGTAAAGCAGACGGTAAATCCAAGGAGGGAGCTTCAAAGAAAAGTGGTAAACCCGAAGAGGATAAAGTTGGAAAATCCAAAGATCTGAAAGCTGGAAACAAGTCCTCTGATACACCAAAAGCAGCTGGAAAATCCAAAGGTGATGATGCAGAGACATCAAAAGGCAGCAGCAAGTCAAAGCTAGAGACTCCCAAAGGTGGCGCAAAGTCTAAGGGTAAATCTCCCAAAGTAGGCAGCAAATCTAACACTAATGGCACCGACAAAGTCAAAGCTACTACATCAAAGGAAGAGGAAGATGACGATGAAGAGATGACGCCTGAACCTGCTAAAGCACCTGAAGCTGCTGCTGCAAAGGGGAAATCTCCAATTACGTCAAAATCGCAGAAGAGTGCGAAGAAGAGAAAACGAGGTTCAAAAAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_17042.p1 GENE.R_Transcript_17042~~R_Transcript_17042.p1 ORF type:complete len:901 (+),score=280.50 R_Transcript_17042:491-3193(+)
MEKELEKHLLEAGNALLSPPSSVNELLSLLDRIEAYLTRVEQSPSDSMKKALSPSMKALIADDLLKHSNIDVKVAVAACISEITRITAPDAPYEDDQMKEVFQLIVSSFENLDDKSSPSFIKRTCILETVAKVRSCVVMLDLECDGLIVEMFQHFFRSIRDDHPESVFSSMETIMTLVLEESEDISIDLLSSILDFLKTDNKEVLPIARELGEKVIEKCASKLKPYLLPAVKSRGASLDDYSKVVANVCQTGTEAVEPGDEDAARKNLADGSELANPPQEKAVEVAMGTLDDAPPSEEVGPTTVPSPKSVMSNGSLQKEIEDTSAGNDNLKEADHDTHDQVKADLEPDKTNAGSLDAEEPEKLHSKPEKSNRRKGRKTTALKSSPEPSEPSLTDDMKESVKVSGPQEKDGRDVDSVVNEDAVAAAAEPSENEKESNPPISSPKTSDNEPDHASSPSMSETLADEIRSKKAGRAKKKDDLVQQSEPVGDVDSKKESDTKKTPEESGIPESKSHKRSGKKASTGQSGLDKEDKISSLVDASKKEDENTSELDAKSTKQSGKKAEVVSNQHDDKKKKGQVKGTPAKGLAKTPPKDSGKKPLPKSTGKSTKDESDVEKASTSSKRKRSQSEGKATGTKGYGEEMVGERVRVWWPDDKKYYKGVVKSYDPKAKRHTVNYDDGDVEYLILAKEKFEILKDEAEAVQGNTSDGESPDESSETPKGKKAKTSSDLVKRGKTGSSAKKGGASSSKSKATPKSGSKQKDDSKADGKSKEGASKKSGKPEEDKVGKSKDLKAGNKSSDTPKAAGKSKGDDAETSKGSSKSKLETPKGGAKSKGKSPKVGSKSNTNGTDKVKATTSKEEEDDDEEMTPEPAKAPEAAAAKGKSPITSKSQKSAKKRKRGSKS*

Click here to download the sequence:
Link to NCBI Protein BLAST