Transcript Information: R_Transcript_170471.p1


Annotated TAIR IDAT1G20300.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:7029701-7031314 | Forward length=537
E-Value1.4E-235
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.0985924454522
Replicate 23.0888412158055
Replicate 33.2419218944275
Condition 2: 8 Hour
Replicate 14.1949712758781
Replicate 23.1230281901097
Replicate 34.8674710043496
Condition 3: 24 Hour
Replicate 15.9852756273344
Replicate 25.9553306129119
Replicate 35.9916063109384


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_170471.p1 GENE.R_Transcript_170471~~R_Transcript_170471.p1 ORF type:complete len:537 (+),score=63.71,PPR_2|PF13041.2|4.5e+02,PPR_2|PF13041.2|9.1e-10,PPR_2|PF13041.2|0.42,PPR_2|PF13041.2|6.1e-17,PPR_2|PF13041.2|9.8e-11,PPR_2|PF13041.2|1.7e-14,PPR_2|PF13041.2|4.7e-12,PPR_2|PF13041.2|1.6e-10,PPR_2|PF13041.2|1.3e-13,PPR_2|PF13041.2|0.00022,PPR_2|PF13041.2|2.1,PPR_1|PF12854.3|0.66,PPR_1|PF12854.3|0.0018,PPR_1|PF12854.3|5.5e-10,PPR_1|PF12854.3|5.7e-11,PPR_1|PF12854.3|7.2e-06,PPR_1|PF12854.3|1.6e-09,PPR_1|PF12854.3|2.8,PPR_1|PF12854.3|0.0093,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|1.1e+03,PPR|PF01535.16|6.7e+02,PPR|PF01535.16|0.00055,PPR|PF01535.16|0.066,PPR|PF01535.16|8e-07,PPR|PF01535.16|2.3e-08,PPR|PF01535.16|2.5e-06,PPR|PF01535.16|7.2e-06,PPR|PF01535.16|1.5,PPR|PF01535.16|0.0028,PPR|PF01535.16|0.00016,PPR|PF01535.16|7.5,PPR_3|PF13812.2|56,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|7.4e-05,PPR_3|PF13812.2|1.5e-06,PPR_3|PF13812.2|1.9e-06,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|0.0065,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|19,TPR_7|PF13176.2|1.7e+03,TPR_7|PF13176.2|16,TPR_7|PF13176.2|0.16,TPR_7|PF13176.2|39,RPN7|PF10602.5|2.8,RPN7|PF10602.5|7.3e+03,RPN7|PF10602.5|11,RPN7|PF10602.5|1.2e+02,RPN7|PF10602.5|0.43 R_Transcript_170471:236-1846(+)
ATGGCATTACTCAGAACAACTTCAAAACAACTAGTTCGTTTCTCTCTCCCTAAAACCTCCCTTAAACCCTTCTGCTCCTCTTCATCCGCTGCAATTCAACCTCACCAACACGACAATGATGAAGAAGAAGAAGACCAACCCTCAATTATTTCCAATCTCTCCCCTCATGAATCAGAACTTGTCCGAAAATTCCACTCTATAATCAAAGTCCACCACCAAAAAAACCCGAACCCTAACAACCCAATTGAACCCATAGACCCTAACTTCACTATCCCATCCCTCACAAACACCTTCTCAACCATCTCCCCTCCAAATTCTCTCTCCTCCCATGTCATCACCTCCGTCCTCCACCGCTGCCGTAGTCTCCGCCACGGCATCCCTTTCCACCAAGCCCTCTCCTTCTTCAACTGGGCCTCCCCTTCTTGGGCCGCCAGGCCCAACAACCCACCTCACCACTTTGTGGAATTAGTTGAGCTTTTCGGCAAGCTACGGCACTTCGACCTAGCATGGAACTTAATAGACTCATTGAAATCCCAAGACATAGAAATCCCTCTAGACATTTTCGTTACCTTGATTCGACGATACGTTAGGGCGGGTATGATACACGAGGCTATTCATACCTTCAACAGAATGGAGGACTATAATTGTAAGCCTGACAAGGAATCGTTCTCAGCCGTCATTTCTATGCTTTGTAGGAAAAGGAAGGCGGCCGAGGCACAGTCGTTTTTCGACTCTTTAAAACACAAGTTTGACCTTGATGTCATGGTCTACACCAGCCTCGTTAATGGCTGGTGTAGGGCGGGCAACATTTTGGAGGCTGAGAGGGTGTTTCGTGAGATGATGATGGCCGGCATTGAGCCCAATGTGTACACCTACACTGTCGTGATCGATGCCTTGTGTAGGCATGGGCAGATTACCAGAGCTCATGATGTTTTCTCGGAAATGATCGATAAGGGGTGTGCCCCAAATGCTGTGACTTTTAATAATTTGATGAGGGTTCATGTTAAGGCTGGTAGGACCGAGAAGGTTTTGCAAGTGTTTAATCAAATGAAGAGGCTCAGGGTGAGCCCTGATACGATTACTTATAACTTTTTGATTGAGACTCATTGTAGGGATGGGAATAGAGACGAGGCTATTAAGTTGATTCATCAGATGATTAGCAAAGGATGTGAGGTGAATGCGCATAGTTTTAACCCGGTTTTTAGCTGTATAGCCAAGGATAGGGATGTTAATGCCGCTCATAAGCTGTTTGCGAAGATGAAGGACTTGAAGTGCCAGCCTAATACCGTGACTTACAACACGTTGATGAGGATGTTTGTAGGGTCGAAATCTACTGACATGGTTTTAAAGCTAAAGAAGGAGATGGATGAACTTGGGATTGAGCCTAATGTGAATACTTACAAGATTTTGATCTCTATGTACTGTGCCATGGGGCATTGGTCTAATGCTTATAAGTATATTAGGGAGATGATCGAGGAGAAGTGCTTGAGGCCGAGTTCACCTGTTTATGAGATGGTTTTGCAGCAATTGAGGAAGGCAGGACAGATGAAGAAGCATGAAGAGTTGGTGGAAAAGATGGTTGAGAGGGGATTTGCTGCTCGTCCCATCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_170471.p1 GENE.R_Transcript_170471~~R_Transcript_170471.p1 ORF type:complete len:537 (+),score=63.71,PPR_2|PF13041.2|4.5e+02,PPR_2|PF13041.2|9.1e-10,PPR_2|PF13041.2|0.42,PPR_2|PF13041.2|6.1e-17,PPR_2|PF13041.2|9.8e-11,PPR_2|PF13041.2|1.7e-14,PPR_2|PF13041.2|4.7e-12,PPR_2|PF13041.2|1.6e-10,PPR_2|PF13041.2|1.3e-13,PPR_2|PF13041.2|0.00022,PPR_2|PF13041.2|2.1,PPR_1|PF12854.3|0.66,PPR_1|PF12854.3|0.0018,PPR_1|PF12854.3|5.5e-10,PPR_1|PF12854.3|5.7e-11,PPR_1|PF12854.3|7.2e-06,PPR_1|PF12854.3|1.6e-09,PPR_1|PF12854.3|2.8,PPR_1|PF12854.3|0.0093,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|1.1e+03,PPR|PF01535.16|6.7e+02,PPR|PF01535.16|0.00055,PPR|PF01535.16|0.066,PPR|PF01535.16|8e-07,PPR|PF01535.16|2.3e-08,PPR|PF01535.16|2.5e-06,PPR|PF01535.16|7.2e-06,PPR|PF01535.16|1.5,PPR|PF01535.16|0.0028,PPR|PF01535.16|0.00016,PPR|PF01535.16|7.5,PPR_3|PF13812.2|56,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|7.4e-05,PPR_3|PF13812.2|1.5e-06,PPR_3|PF13812.2|1.9e-06,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|0.0065,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|19,TPR_7|PF13176.2|1.7e+03,TPR_7|PF13176.2|16,TPR_7|PF13176.2|0.16,TPR_7|PF13176.2|39,RPN7|PF10602.5|2.8,RPN7|PF10602.5|7.3e+03,RPN7|PF10602.5|11,RPN7|PF10602.5|1.2e+02,RPN7|PF10602.5|0.43 R_Transcript_170471:236-1846(+)
MALLRTTSKQLVRFSLPKTSLKPFCSSSSAAIQPHQHDNDEEEEDQPSIISNLSPHESELVRKFHSIIKVHHQKNPNPNNPIEPIDPNFTIPSLTNTFSTISPPNSLSSHVITSVLHRCRSLRHGIPFHQALSFFNWASPSWAARPNNPPHHFVELVELFGKLRHFDLAWNLIDSLKSQDIEIPLDIFVTLIRRYVRAGMIHEAIHTFNRMEDYNCKPDKESFSAVISMLCRKRKAAEAQSFFDSLKHKFDLDVMVYTSLVNGWCRAGNILEAERVFREMMMAGIEPNVYTYTVVIDALCRHGQITRAHDVFSEMIDKGCAPNAVTFNNLMRVHVKAGRTEKVLQVFNQMKRLRVSPDTITYNFLIETHCRDGNRDEAIKLIHQMISKGCEVNAHSFNPVFSCIAKDRDVNAAHKLFAKMKDLKCQPNTVTYNTLMRMFVGSKSTDMVLKLKKEMDELGIEPNVNTYKILISMYCAMGHWSNAYKYIREMIEEKCLRPSSPVYEMVLQQLRKAGQMKKHEELVEKMVERGFAARPI*

Click here to download the sequence:
Link to NCBI Protein BLAST