Transcript Information: R_Transcript_170473.p1


Annotated TAIR IDAT3G13770.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4519647-4521533 | Forward length=628
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.54787718505475
Replicate 20.43120364204088
Replicate 30.43425094969009
Condition 2: 8 Hour
Replicate 10.34814025991344
Replicate 20.38857772551823
Replicate 30.57351060411965
Condition 3: 24 Hour
Replicate 10.72536515727343
Replicate 20.34842431106757
Replicate 30.89902104559136


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_170473.p1 GENE.R_Transcript_170473~~R_Transcript_170473.p1 ORF type:complete len:633 (+),score=110.13,PPR|PF01535.16|3.6e+03,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.011,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|0.018,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|0.00035,PPR|PF01535.16|4e-07,PPR|PF01535.16|0.063,PPR|PF01535.16|0.14,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.9,PPR_2|PF13041.2|7.5e+02,PPR_2|PF13041.2|0.33,PPR_2|PF13041.2|2.8e-10,PPR_2|PF13041.2|2.3,PPR_2|PF13041.2|7e-08,PPR_2|PF13041.2|0.03,PPR_2|PF13041.2|1.7e-09,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|8.3,PPR_2|PF13041.2|1.6e+02,DYW_deaminase|PF14432.2|1.4e-40,PPR_1|PF12854.3|7.1e+03,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|0.0078,PPR_1|PF12854.3|67,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|2.2e+02,PPR_1|PF12854.3|0.071,PPR_1|PF12854.3|11,PPR_1|PF12854.3|52,PPR_1|PF12854.3|0.0071,PPR_3|PF13812.2|9.1,PPR_3|PF13812.2|55,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|80,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|6.1e+03,PPR_3|PF13812.2|83,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|3,PPR_3|PF13812.2|2.2 R_Transcript_170473:82-1980(+)
ATGCTCAAGACAATAAAGTACTCAGCTGCCATTGCTAAGTCATTCTCCCGCCAACTTTCTCTGGTATCATTCCAGCCAAACCCATCAAATTTAGACACACTAAGCTCCAACGGTCACTTGAAAGAGGCCTTGCTGGAAATGGCCCTTCAAGGCCTGGAGATGAAGTTTGAAGGGTATGATATTATTTTAAATGAGTGTGTGAAGCGAAAGGCTCTTAGAGAAGGCCAAAGAGTGCATGCCCACATGATCAAAACCCAGTACCTTCCACCTGTGTACCTTAGAACTAGGCTTATTGTGTTTTATTGTAAATGTGAGTTTTTAGGTGATGCGCGTGAGGTGTTCGATGAAATGCCTGAACGAAATGTGGTCTCCTGGACTGTCTTGATTTCTGGGTATTCCCAAAGAGGGTTTGCCTCTGAGTCTTTGGAGCTTTTTGTACAAATGTTGAGATCAGGTACAGAACCAAACGAGTTTACTTTTGCCTCCATTCTATCTTCATGTATAGGACACTGTGGATTTGAATGTGGAAGACAGATTCACTCTCTTATAATAAGGCATAATTATGACTCCCACATGTTTGTCGGGAGCTCACTTCTTGACATGTATGCCAAGGCTGGGAAAATCCATGAAGCTCGGATGATCTTTGATGGATTACCAGAGAGAGATGTCGTTTCTTGCACTGCCATAATTTCAGGGTATGCACAGTTGGGTTTTGATGAAGAGGCAGTAGAATTATTCCGTAGGCTACAGAAGGAAGGAATGTGTTCAAACTATGTTACTTATGCTAGTTTGTTAACGTCATTATCTGGACTCGCTGCTTTAGATCATGGTAAGCAAGTTCATAATCATGTTTTGCGACGTCAACTTCCCTCTTATGTGGTACTGGAAAACTCAATGATTGATATGTATGCAAAATGTGGGAACCTCATTTATGCAAGAAGGGTATTTGATAACATGCCCGAGAGAAGTGTCATATCATGGAATGCCATGCTTGTGGGATATAGCAAACATGGGATGGGATCTGAGGTTGTTGAACTTTTCAAATTGATGAGAGAAGAAGATAAAGTTAAACCTGACAGTATAACTTTCTTGGCTGTCTTATCCGGTTGCAGCCATGGTGGGTTGGAAGATACTGGACTGAACATTTTTGATGAGATGGTTATGCAGGGACATGGGGTTGAGCCGAACATAGAGCATTTTGGATGTGTTGTCGATTTGCTTGGGCGTTCTGGGCAGTTAGAGAACGCTTTAAAATTTATCAGGGAGATGCCTCTTGAGCCAACTGCCGCCATTTGGGGATCACTTTTAGGCGCTTGCAGGGTTCACTCCAACTTTGATGTAGGGGAGTACGTGGGTCGCCAACTTCTACAGATCGAGCCTGAAAATGCTGGAAATTATGTCATCCTATGCAATTTATATGCCTCAGCAGGGAGATGGGAAGAGGTAAGAACTCTGAGGGAATTGATGAAGGAGAAGACTGTGGTTAAGGAGCCAGGAAGGAGCTGGATTGAGCTGAATCAGATTCTGCATACGTTTCATGCAGGTGATCGGTCCCATCCCAGGAAAGATGAAGTGCATGCAAAAGTGAAGGATCTGGCAATTCGGATCAAAGAAGCTGGTTATGAACCTGATCTTAGTTGTGTCTTGTATGATGTTGATGAGGAACAGAAGGAGAAGATACTTCTAGGTCACAGTGAAAAACTGGCTTTGGCTTATGGGCTTTTGAGTACTCCTGATGGACTCCCTCTCAGAGTTATTAAAAACCTCAGAATTTGTGTGGATTGTCACAACTTTGCCAAGTTCATCTCAAAGATTTATAAAAGAGAGGTGTCTTTGAGGGATAAAAACTGCTTCCATCATATCACTGGAGGAGTTTGTTCTTGTGGAGATTATTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_170473.p1 GENE.R_Transcript_170473~~R_Transcript_170473.p1 ORF type:complete len:633 (+),score=110.13,PPR|PF01535.16|3.6e+03,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.011,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|0.018,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|0.00035,PPR|PF01535.16|4e-07,PPR|PF01535.16|0.063,PPR|PF01535.16|0.14,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.9,PPR_2|PF13041.2|7.5e+02,PPR_2|PF13041.2|0.33,PPR_2|PF13041.2|2.8e-10,PPR_2|PF13041.2|2.3,PPR_2|PF13041.2|7e-08,PPR_2|PF13041.2|0.03,PPR_2|PF13041.2|1.7e-09,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|8.3,PPR_2|PF13041.2|1.6e+02,DYW_deaminase|PF14432.2|1.4e-40,PPR_1|PF12854.3|7.1e+03,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|0.0078,PPR_1|PF12854.3|67,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|2.2e+02,PPR_1|PF12854.3|0.071,PPR_1|PF12854.3|11,PPR_1|PF12854.3|52,PPR_1|PF12854.3|0.0071,PPR_3|PF13812.2|9.1,PPR_3|PF13812.2|55,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|80,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|6.1e+03,PPR_3|PF13812.2|83,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|3,PPR_3|PF13812.2|2.2 R_Transcript_170473:82-1980(+)
MLKTIKYSAAIAKSFSRQLSLVSFQPNPSNLDTLSSNGHLKEALLEMALQGLEMKFEGYDIILNECVKRKALREGQRVHAHMIKTQYLPPVYLRTRLIVFYCKCEFLGDAREVFDEMPERNVVSWTVLISGYSQRGFASESLELFVQMLRSGTEPNEFTFASILSSCIGHCGFECGRQIHSLIIRHNYDSHMFVGSSLLDMYAKAGKIHEARMIFDGLPERDVVSCTAIISGYAQLGFDEEAVELFRRLQKEGMCSNYVTYASLLTSLSGLAALDHGKQVHNHVLRRQLPSYVVLENSMIDMYAKCGNLIYARRVFDNMPERSVISWNAMLVGYSKHGMGSEVVELFKLMREEDKVKPDSITFLAVLSGCSHGGLEDTGLNIFDEMVMQGHGVEPNIEHFGCVVDLLGRSGQLENALKFIREMPLEPTAAIWGSLLGACRVHSNFDVGEYVGRQLLQIEPENAGNYVILCNLYASAGRWEEVRTLRELMKEKTVVKEPGRSWIELNQILHTFHAGDRSHPRKDEVHAKVKDLAIRIKEAGYEPDLSCVLYDVDEEQKEKILLGHSEKLALAYGLLSTPDGLPLRVIKNLRICVDCHNFAKFISKIYKREVSLRDKNCFHHITGGVCSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST