Transcript Information: R_Transcript_170690.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value7E-56
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8769111521562
Replicate 21.2414265027631
Replicate 30.88329322350202
Condition 2: 8 Hour
Replicate 11.6995330426108
Replicate 22.5292514164837
Replicate 32.3331119049341
Condition 3: 24 Hour
Replicate 11.7705249790003
Replicate 21.7009197087849
Replicate 31.6317311977378


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_170690.p1 GENE.R_Transcript_170690~~R_Transcript_170690.p1 ORF type:complete len:389 (+),score=9.47,LRR_8|PF13855.2|9.4e+03,LRR_8|PF13855.2|5.8e+03,LRR_8|PF13855.2|27,LRR_8|PF13855.2|1.1e-06,LRR_8|PF13855.2|9.2e-05,LRR_8|PF13855.2|8.8,LRR_8|PF13855.2|4.8,LRRNT_2|PF08263.8|6.4e-08 R_Transcript_170690:28-1194(+)
ATGTTATGCATCACACTTACAACACTGCTATTGATCTCATCGTTCAATCTGAGCTTTTCCACAGAAGTTTGCAATCCCCATGACAAGAAAGCTCTCTTACAAATCAAAAAACAATTTGGAAATCCCCCCTCATTATCTTCATGGAACATTAGTACAGACTGCTGCACAAATTGGCAAAATAGCATTGATGCAAGTGTGCATTGCGACGACCATGGCCGTGTCACCCGTATCAACCTTAACGGTAACGGGCGTCCCGACTTCTCCGGTGAGTTCCCGGCAGCCTTTGGTCATCTCTCCTTCCTTGAATTCCTCGTCATTTTCGACATTCCCTACGTTACTGGCTCTATTCCACACACCTTTGCCAAGCTTACCAACTTAAGGGTCTTGGTAATTGGCATAAGTAGCCTTTCTGGCCCAATCCCTCACTTCTTGGGCCGGCTTACTAACATGAAACAACTTGATCTGATTTCCAGCAATCTCACCGGCCCGATACCAAACACCTTGGCCCAACTGACAAACCTCACGGAACTTTCGCTAGGGGGCAACCAGTTATCCGGCCCAATACCTGATATCTTCGGCCTAATGTCTAGGCTCTCAAATATAGATCTTAGCCACAACAACCTACGTGGCCCAATCCCGGCCTCATTGGGCCTTCTCCCAAACATAGGCTACATCTCTCTTCAACACAACCAGCTGACCGGCCCAATCCCAGAGTCGCTCGGTCTCCTCAAAAACCCAGTAGACATCATCATGTCCCACAACCAACTAACTGGGCCGATCCCCAAGTCATTGGGCCGGATCAGTGCACAACAATTGGACCTCTCTTTCAATAACATCACCGGAGATGCCTTGGTTTTGTTTTCCAACAGTACTAATAGAACAACATCGTTTGGAATAAGTTATATTTACCTGAACAACAATTTTCTCAAGTTTTACTTCTCAAATGTGGAGCTCCGAAAGGACATATATGGATTCAATATAAGCCATAATATGATATATGGATCCCTTCCTCAAAGCTTAGCTAACGTGCCTTATTTGTTTGAGATGGATGTTAGTTACAATTGTCTTTGTGGGCCCATCCCAACAAGTAGAAGATTGCAGCAGTTTGGGCTTGACGTATATGCCCATAATAAGTGCCTTTGCGGACCTCCTTTACCCGCTTGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_170690.p1 GENE.R_Transcript_170690~~R_Transcript_170690.p1 ORF type:complete len:389 (+),score=9.47,LRR_8|PF13855.2|9.4e+03,LRR_8|PF13855.2|5.8e+03,LRR_8|PF13855.2|27,LRR_8|PF13855.2|1.1e-06,LRR_8|PF13855.2|9.2e-05,LRR_8|PF13855.2|8.8,LRR_8|PF13855.2|4.8,LRRNT_2|PF08263.8|6.4e-08 R_Transcript_170690:28-1194(+)
MLCITLTTLLLISSFNLSFSTEVCNPHDKKALLQIKKQFGNPPSLSSWNISTDCCTNWQNSIDASVHCDDHGRVTRINLNGNGRPDFSGEFPAAFGHLSFLEFLVIFDIPYVTGSIPHTFAKLTNLRVLVIGISSLSGPIPHFLGRLTNMKQLDLISSNLTGPIPNTLAQLTNLTELSLGGNQLSGPIPDIFGLMSRLSNIDLSHNNLRGPIPASLGLLPNIGYISLQHNQLTGPIPESLGLLKNPVDIIMSHNQLTGPIPKSLGRISAQQLDLSFNNITGDALVLFSNSTNRTTSFGISYIYLNNNFLKFYFSNVELRKDIYGFNISHNMIYGSLPQSLANVPYLFEMDVSYNCLCGPIPTSRRLQQFGLDVYAHNKCLCGPPLPAC*

Click here to download the sequence:
Link to NCBI Protein BLAST