Transcript Information: R_Transcript_170717.p1


Annotated TAIR IDAT5G53110.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21529022-21533008 | Forward length=382
E-Value4E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.4056213545493
Replicate 20.15552815123184
Replicate 30
Condition 2: 8 Hour
Replicate 10.181376777387
Replicate 20
Replicate 30.53782549986332
Condition 3: 24 Hour
Replicate 10.68023132526531
Replicate 20.49011686423505
Replicate 30.16213114582887


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_170717.p1 GENE.R_Transcript_170717~~R_Transcript_170717.p1 ORF type:complete len:135 (+),score=5.79,zf-RING_2|PF13639.2|1.5e+03,zf-RING_2|PF13639.2|2.4e-14,zf-RING_11|PF17123.1|1.9e-10,zf-RING_11|PF17123.1|3.3e+03,zf-rbx1|PF12678.3|1.6e+04,zf-rbx1|PF12678.3|2.1e-10,zf-C3HC4_2|PF13923.2|2.9e+03,zf-C3HC4_2|PF13923.2|3.5e-08,zf-C3HC4|PF00097.21|1.4e+04,zf-C3HC4|PF00097.21|4.7e-08,zf-RING_5|PF14634.2|1.8e+03,zf-RING_5|PF14634.2|2.9e-06,zf-C3HC4_3|PF13920.2|1.5e+03,zf-C3HC4_3|PF13920.2|9.3e-06 R_Transcript_170717:46-450(+)
ATGTTCAATGTAATCATCCCGGCAGTAATAATGTTAGGTGCTTTTGTAAGTTACGTTTGTTGTTGTTGCAAGATACGAAGAAGAGCAACTCAACGTCAAAGCTATATATTTCACATTGCCACCATTAGAACGGCTGACCGGCCAGCATCACAGCCTCATCAACCACCCTTCGCCGCCGCCGGCCTCGATCAGGATACGATCGACTCGTTCCCAAGCATTGTGATAGGGGAGAGTGGAAGAATGATTAACAAGGATGATAATACATGCTCAATTTGCTTGGCTGAGTATAATCCGAACGAGAAGTTGAAGATTTTGCCTCAATGCTTGCATAGATTTCATTCTGATTGTATTGACCAGTGGCTTCGATCCAATGGGACTTGCCCCATCTGCAGAATAACTCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_170717.p1 GENE.R_Transcript_170717~~R_Transcript_170717.p1 ORF type:complete len:135 (+),score=5.79,zf-RING_2|PF13639.2|1.5e+03,zf-RING_2|PF13639.2|2.4e-14,zf-RING_11|PF17123.1|1.9e-10,zf-RING_11|PF17123.1|3.3e+03,zf-rbx1|PF12678.3|1.6e+04,zf-rbx1|PF12678.3|2.1e-10,zf-C3HC4_2|PF13923.2|2.9e+03,zf-C3HC4_2|PF13923.2|3.5e-08,zf-C3HC4|PF00097.21|1.4e+04,zf-C3HC4|PF00097.21|4.7e-08,zf-RING_5|PF14634.2|1.8e+03,zf-RING_5|PF14634.2|2.9e-06,zf-C3HC4_3|PF13920.2|1.5e+03,zf-C3HC4_3|PF13920.2|9.3e-06 R_Transcript_170717:46-450(+)
MFNVIIPAVIMLGAFVSYVCCCCKIRRRATQRQSYIFHIATIRTADRPASQPHQPPFAAAGLDQDTIDSFPSIVIGESGRMINKDDNTCSICLAEYNPNEKLKILPQCLHRFHSDCIDQWLRSNGTCPICRITP*

Click here to download the sequence:
Link to NCBI Protein BLAST