Transcript Information: R_Transcript_17156.p1


Annotated TAIR IDAT4G38350.2
Annotated Gene NamePatched family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:17958324-17966846 | Reverse length=1297
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.090208219576
Replicate 219.45810990961
Replicate 323.102521678171
Condition 2: 8 Hour
Replicate 125.741550329155
Replicate 229.650693137396
Replicate 335.682653356316
Condition 3: 24 Hour
Replicate 132.908993510775
Replicate 226.579414560439
Replicate 337.307980150072


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_17156.p1 GENE.R_Transcript_17156~~R_Transcript_17156.p1 ORF type:5prime_partial len:819 (+),score=131.84,Patched|PF02460.14|1.3e-55,Patched|PF02460.14|7.4e-31,Sterol-sensing|PF12349.4|4.5e-49,Sterol-sensing|PF12349.4|9.4e+03,Sterol-sensing|PF12349.4|4.2 R_Transcript_17156:3-2459(+)
GTGTCTCTAGCTGACATTTGTTTGAAGCCTTTAGGGGAGGATTGTGCCATCCAGAGTATCCTTCAGTATTTTCAGATGGATCCTTACAATTATGATGATTATGGAGGACTAGAGCATGCTTTGTATTGCTTTCAGCATTACACTTCCACTGATAAGTGTTTGAGCGCCTTTAAGGCCCCACTTGATCCAAGTACTGCATTAGGGGGATTCCCTGGGAACAATTTTTCTGAGGCTACAGCATTTGTTGTAACCTACCCAGTCAATAATGTGATTGATGAATCAAGTGAAGCAAGCAGGATGGTTGTGGAGTGGGAAAGGGCTTTCATTAAGTTGGCCAAGGAACAACTGTTGCCAATGGTGCAGTCTAGCAATCTGACATTATCTTTCTCTTCTGAAAGCTCAATTGAGGATGAACTAAAACGTGAAAGCTATGCAGATGTCATAACCATTTTAATAAGCTATCTTGTGATGTTTGCTTACATATCAATTACGCTGGGAGACAGGCCTCATTTATCTTCCTTTTACATTTCCTCTAAGGTGTTACTCGGTCTATCAGGAGTTGTGGTTGTTATACTGTCGGTCCTTGGGTCAGTTGGCTTCTTCAGTGCTTTTGGAGTGAAATCTACATTAATAATCATGGAAGTCATTCCTTTCCTTGTTCTGGCTGTTGGAGTAGACAACATGTGCATATTAGTACATGCTGCAAAACGGCAGCCAGTTGAAATTCCTCTGGAAGAACGAATAAGCAATGCCCTTGCTGAAGTTGGTCCATCTATAACACTTGCTAGTTTGTCAGAGGTTCTCGCATTTGCCGTAGGAGCTTTCATCACTATGCCAGCATGTCGTGTCTTCTCGATGTTTGCAGCTATGGCAGTCCTGCTGGACTTCCTTCTTCAACTTAGTGCTTTTGTTGCACTGATAGTGTTGGACTTCAAAAGGGCTGAAAATTACAGGATTGACTGTTTCCCATGCATCAAAATATCTTCGTCTTCTGTGGCATCAGGAATTGATCAGAGAAGTCCGGGATTGCTTACTCGATATATGAAGGAAGTTCATGCACCCATACTTGTAATTCGGGGAGTTAAAGTTGTTGTCCTTGCTCTATTTGCTGGATTTACTTTAGCAAGCATTGCATTATGCCCAAGGATCGAGCCAGGCTTAGAGCAGCAGATTGCTCTTCCACGTGATTCTTATCTTCAGGGTTATTTTAATAATATTGCAGAGTATCTACGAGTGGGACCTCCTTTATATTTTGTAGTAAAGGATTATAACTACAGCTCCAACTCAAGGCATACAAATCAACTGTGTTCTATCAGCAAGTGTCATTCAAATTCCCTTTTAAATGAGATTTCAAGAGCATCATTGACTCCTGAATCTACCTACATTGCCAAACCAGCTGCTTCATGGCTTGATGATTTTCTTGTGTGGTTATCACCTGAAGCTTTTGGTTGTTGTCGGAAGTTTGTGAATGGTAGTTATTGCCCCCCTGATGATCAGCCTCCATGTTGCTCACCTGATGAAGGTCCATGTGGTTTGGGAGGAGTTTGCAAAGATTGTACTACGTGCTTTCGCCATTCAGACCTGCAGAATGATCGTCCTTCAACAGCTCAATTCAGGGAGAAGCTCCCATGGTTTCTTGATGCATTGCCTTCTGCTGACTGTGCTAAGGGGGGTCATGGAGCCTACACTAATAGTTTAGACTTGAATGGTTATGAGAGTGGGATTATACGAGCATCTGAGTTTCGCACATATCATACTCCCGTAAATAAGCAGAGTGACTATGTCAATTCACTGCGTGCTGCACGTGAGTTTAGTTCAAAAATGTCTGATTCCCTGAAGATGGATATCTTCCCATATTCTGTCTTCTATATTTTCTTCGAGCAATATTTGGACATATGGACAACTGCTCTGGTCAACATTGCCATCGCACTTGGTGCTGTTTTTATTGTCTGCCTAATTATATCCTCAAGTTTCTGGAGTTCAGCTATCATTCTGCTTGTTCTAGCAATGATTGTGGTGGATCTAATGTTGGGACAATGGTACCAAGTACCAACCCTTGATGGTGTCATGGCAATCTTGGATATTCAACTCAATGCGGTTTCTGTTGTCAACCTTATCATGTCAATAGGGATTGCTGTGGAGTTTTGTGTGCATATAACGCACGCGTTTTCGGTCAGCCATGGGGATAGGAACCAGCGAACAAAGGAGGCTCTTGGTACCATGGGGGCTTCGGTTTTCAGCGGAATCACACTAACGAAGTTGGTTGGAGTTATTGTCCTTGCATTTGCTAAATCAGAGATCTTTGTGGTGTATTACTTTCAAATGTACCTCGCCTTAGTTATCATTGGCTTCCTCCACGGGCTTATCTTTCTCCCGGTGTTGCTGAGTTTGATCGGCCCACCATCAAGAATTGTGGCTATTGGGAACGAGCCTTCGGCCACAGTACAATTGAGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_17156.p1 GENE.R_Transcript_17156~~R_Transcript_17156.p1 ORF type:5prime_partial len:819 (+),score=131.84,Patched|PF02460.14|1.3e-55,Patched|PF02460.14|7.4e-31,Sterol-sensing|PF12349.4|4.5e-49,Sterol-sensing|PF12349.4|9.4e+03,Sterol-sensing|PF12349.4|4.2 R_Transcript_17156:3-2459(+)
VSLADICLKPLGEDCAIQSILQYFQMDPYNYDDYGGLEHALYCFQHYTSTDKCLSAFKAPLDPSTALGGFPGNNFSEATAFVVTYPVNNVIDESSEASRMVVEWERAFIKLAKEQLLPMVQSSNLTLSFSSESSIEDELKRESYADVITILISYLVMFAYISITLGDRPHLSSFYISSKVLLGLSGVVVVILSVLGSVGFFSAFGVKSTLIIMEVIPFLVLAVGVDNMCILVHAAKRQPVEIPLEERISNALAEVGPSITLASLSEVLAFAVGAFITMPACRVFSMFAAMAVLLDFLLQLSAFVALIVLDFKRAENYRIDCFPCIKISSSSVASGIDQRSPGLLTRYMKEVHAPILVIRGVKVVVLALFAGFTLASIALCPRIEPGLEQQIALPRDSYLQGYFNNIAEYLRVGPPLYFVVKDYNYSSNSRHTNQLCSISKCHSNSLLNEISRASLTPESTYIAKPAASWLDDFLVWLSPEAFGCCRKFVNGSYCPPDDQPPCCSPDEGPCGLGGVCKDCTTCFRHSDLQNDRPSTAQFREKLPWFLDALPSADCAKGGHGAYTNSLDLNGYESGIIRASEFRTYHTPVNKQSDYVNSLRAAREFSSKMSDSLKMDIFPYSVFYIFFEQYLDIWTTALVNIAIALGAVFIVCLIISSSFWSSAIILLVLAMIVVDLMLGQWYQVPTLDGVMAILDIQLNAVSVVNLIMSIGIAVEFCVHITHAFSVSHGDRNQRTKEALGTMGASVFSGITLTKLVGVIVLAFAKSEIFVVYYFQMYLALVIIGFLHGLIFLPVLLSLIGPPSRIVAIGNEPSATVQLS*

Click here to download the sequence:
Link to NCBI Protein BLAST