Transcript Information: R_Transcript_171648.p1


Annotated TAIR IDAT1G64140.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:23804069-23806009 | Reverse length=646
E-Value8E-48
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.10612186601581
Replicate 20.17090011966754
Replicate 30.3196288966905
Condition 2: 8 Hour
Replicate 10.14235967992584
Replicate 20.23400922857055
Replicate 30.52766309942985
Condition 3: 24 Hour
Replicate 10.16017074810026
Replicate 20.25645649872764
Replicate 30.53446720747075


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_171648.p1 GENE.R_Transcript_171648~~R_Transcript_171648.p1 ORF type:3prime_partial len:860 (+),score=113.04,LRR_8|PF13855.2|0.072,LRR_8|PF13855.2|6.5e-08,LRR_8|PF13855.2|1.2e-09,LRR_8|PF13855.2|0.45,LRR_8|PF13855.2|2.1e+03,B3|PF02362.17|1.5e-11,B3|PF02362.17|9.4e+02,LRR_4|PF12799.3|2.9e+02,LRR_4|PF12799.3|0.0021,LRR_4|PF12799.3|0.00012,LRR_4|PF12799.3|1,LRR_4|PF12799.3|9.6e+02,LRR_4|PF12799.3|55 R_Transcript_171648:102-2678(+)
ATGGAGAATCCGGCCTTTAGAAACCCACCAGAGAGCAAAAGCGAGACTGAGACTGAGACTGAGCGTGAGCACATGTTTGATATCGTTTTGACGTCGCTAGACATCGGAGGGCAGCTCCACATTCCTGAGAATCATGGGGAGAAGCACTTCCCGGAACTGTCTAGCGATTTCAGACTCTCCGACTCCTGTTCTACCAACAAACCCAGCAGTATTTCCTTATCCTTCCTTGATCCTCAGGGGAAACTTTGGCCTTTCAAATATGTCAGGTTTCAGGGAAATGTTTTCGCCTTCACTGAAGGCTGGGCTGATTATGTAAGAGAGAATGGTCTAGTTGCAGGAGATACAGTGTCGTTTTGGCATGTACCAGGGAAGCAACCTGACAGTGAAGATCTTCTTTACATTGTCTATAAGACAAGACTTCCACAACGACTATGCTCGAATTTGATTCTGCAAGAGGATTCTGATACGGGCAATCAGAAAAGTTCAACAACATCCTCAGATCCTGCGGAAGAAAGTATCAGCACGTCAGCACAGAGTGGCCAGGTATGCTTGTTCAAGGGGTGTACTGATGGCACTCTAGGTAGCTCCGGGTTCTGCAAAGTGCACGGAGCTGATGGAGAGCTCTATGCAGTTTCCAAATCTACTCTGGCTCCTACCTTTCAAAAACATAACTGTCGTAGCCGTTGTATGTATAAACTTAAAGAAGGGACCTGTGACAAACCGTGCGTCGATGATAGCTCTGACTATTGCTTTGCCCATGGTGTTAGGAAGAGGTGTGCCTTTGTAGACTGCACTCGGTATGCTCGTGCTGGCACTGAATTCTGTTTCGCCCATGGCAGGAAGAGGTGTGCCTTTATAAGGTGCACTAAGAGTGTTGCAAGCAGTCGCAGTAAATTTTGTATTGCCCATATTGGAGGCAGGGAGGATTGCGCCTCTCCAGGGTGCACTAAGCTCGCAAGTGATCGTAGTATATTTTGTATTGCCCATATTGGTGGGGAGAAATGCGCCTCTCCAGGGTGCACTAGGCTCGCAAGAGGTCGTAGTAAATTTTGTATTGCCCATATTGGAGGTGGGGAGAAATGCGCCTCTCCAGGGTGCCATAAGCGCGCTCGAGGCCCAAGCGGTTTTTGTATCGGGCATGGGGGCAAGAAGTTGTGCAAGTTTGAAAACTGTGGGAAGCTTGCTACAGCTTACACTGACTTGTGCAAAGAGCATGGTGGTGGTAACCGCCACTGCAGTTGGGAGGGTGAGGAGAAGTGTCCTAATTTTGCAATGAGTGAATTTTGTTCCATACATAACAGCAAGGTTGATGACAAGGAAACTGATCCCAAGCAAGGAATTGAGCCTTCTGTAGCTATTACTGTGGTTCGTGATAACAGTACCGACAACGAGGCATATCTAGCAATGCTCTATTGTGCTCTCTTCCCCGAAGATCATGAATTTCCTAAGGATATGTTGGTTCATCTGTGGATTGCTGGAGGCCTTTTTAAGGAAGAGTTGTTCGAGTGCACTGCTGGGAGGCACTTTGAAAAGTTTCTGTTCTTCGGTTATATCCAGTTTTCCAAAACTGATTTGGTTTCTGGGAAACCTATGTACAAATTTGACAGAAAAAATGTGTCAGACTTCTTGTCAGGAAGCAGCCATGCTTTGATAGATAGTAGAGATTCTAACTTAATTGATGATCTCCCCAAGGACATTTCTCATGTTTCTGTGAGGTGTTGCAAACAGATAGATTCCAAGGCTATTGGTTCTTTCAAAAGTTTGAAGCACTTAGAGACACTTTTGTTTCTCGAGGGCCACAAATCAAGCTTTAAACAAGTCCCTCGTGGTTTGTTTCTTTCATTGGAGCTACTGCAAGCATTGGATTTGAGCCGAACTCATATATCTGTGTTACCAAATTCTGTAGCAAACATGAAACAGTTGCGCTATTTAGATCTTTCGCATACCTCCATTAGACGCTTGCCTGAAACAATGGACCAGTTAAACAATTTACAGACACTGAAACTCAAGGGTTGCTCAAAGTTCTCCATGTTGCCAAAGGGCATGAAAAAGCTGGTCAACTTACGTCACTTAGACCTTAACATCCTTTACCAATTACGCTCCATGCCCAAAGGAATGGGGGCGCTTACTAATCTTCAAACTTTGTCAGCTTTCCTTGTCGACAGAGAAGATGAGTGTGGTATTAAGCAGTTGGAAAATATGAACAACTTGAAAGGAAGCTTTTGTATCTCGAGGTTAGAAAATGTACATACGAAAGAAGAGGCCAGCAAAGCGTGCTTGTACAATAAGTCACAGCTTATGAAACTGGAGTTTCATTGGAGTGACTCTAGAGATGAAGACAGCGTAAATATTGATGACAAGATCCTTTGTTCTCTAAGGCCAAACACAAACCTAGAAGAGCTACGAGTAGTTCATTATGGTGGTTCTGAACTACCTAGTTGGATTTCTGATCCAGCATTCTCCAAGCTTGTTAGCATCATTCTCTTTAAGTGTGAACATTGTCTAGCTCTACCATCTCTTGGACAACTACCATCACTCAAAATTCTCAACATAGTTGAGTTCGACAAACTAATGGTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_171648.p1 GENE.R_Transcript_171648~~R_Transcript_171648.p1 ORF type:3prime_partial len:860 (+),score=113.04,LRR_8|PF13855.2|0.072,LRR_8|PF13855.2|6.5e-08,LRR_8|PF13855.2|1.2e-09,LRR_8|PF13855.2|0.45,LRR_8|PF13855.2|2.1e+03,B3|PF02362.17|1.5e-11,B3|PF02362.17|9.4e+02,LRR_4|PF12799.3|2.9e+02,LRR_4|PF12799.3|0.0021,LRR_4|PF12799.3|0.00012,LRR_4|PF12799.3|1,LRR_4|PF12799.3|9.6e+02,LRR_4|PF12799.3|55 R_Transcript_171648:102-2678(+)
MENPAFRNPPESKSETETETEREHMFDIVLTSLDIGGQLHIPENHGEKHFPELSSDFRLSDSCSTNKPSSISLSFLDPQGKLWPFKYVRFQGNVFAFTEGWADYVRENGLVAGDTVSFWHVPGKQPDSEDLLYIVYKTRLPQRLCSNLILQEDSDTGNQKSSTTSSDPAEESISTSAQSGQVCLFKGCTDGTLGSSGFCKVHGADGELYAVSKSTLAPTFQKHNCRSRCMYKLKEGTCDKPCVDDSSDYCFAHGVRKRCAFVDCTRYARAGTEFCFAHGRKRCAFIRCTKSVASSRSKFCIAHIGGREDCASPGCTKLASDRSIFCIAHIGGEKCASPGCTRLARGRSKFCIAHIGGGEKCASPGCHKRARGPSGFCIGHGGKKLCKFENCGKLATAYTDLCKEHGGGNRHCSWEGEEKCPNFAMSEFCSIHNSKVDDKETDPKQGIEPSVAITVVRDNSTDNEAYLAMLYCALFPEDHEFPKDMLVHLWIAGGLFKEELFECTAGRHFEKFLFFGYIQFSKTDLVSGKPMYKFDRKNVSDFLSGSSHALIDSRDSNLIDDLPKDISHVSVRCCKQIDSKAIGSFKSLKHLETLLFLEGHKSSFKQVPRGLFLSLELLQALDLSRTHISVLPNSVANMKQLRYLDLSHTSIRRLPETMDQLNNLQTLKLKGCSKFSMLPKGMKKLVNLRHLDLNILYQLRSMPKGMGALTNLQTLSAFLVDREDECGIKQLENMNNLKGSFCISRLENVHTKEEASKACLYNKSQLMKLEFHWSDSRDEDSVNIDDKILCSLRPNTNLEELRVVHYGGSELPSWISDPAFSKLVSIILFKCEHCLALPSLGQLPSLKILNIVEFDKLMV

Click here to download the sequence:
Link to NCBI Protein BLAST