Transcript Information: R_Transcript_171954.p1


Annotated TAIR IDAT3G16610.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:5656371-5658335 | Reverse length=654
E-Value8.7E-224
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.739452962269
Replicate 20.62365248761281
Replicate 31.0205972196305
Condition 2: 8 Hour
Replicate 11.4243015501492
Replicate 21.2730205008596
Replicate 32.9653621310533
Condition 3: 24 Hour
Replicate 12.1025714540224
Replicate 21.2283250619752
Replicate 32.3838094213453


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_171954.p1 GENE.R_Transcript_171954~~R_Transcript_171954.p1 ORF type:complete len:808 (+),score=139.21,PPR|PF01535.16|4.2e+02,PPR|PF01535.16|0.0083,PPR|PF01535.16|0.066,PPR|PF01535.16|0.0023,PPR|PF01535.16|25,PPR|PF01535.16|0.00049,PPR|PF01535.16|0.019,PPR|PF01535.16|9.5e-06,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|0.13,PPR|PF01535.16|0.85,PPR|PF01535.16|4.5e+03,PPR|PF01535.16|2.2e+02,PPR_2|PF13041.2|4.7e+03,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|5e-06,PPR_2|PF13041.2|9.9e+03,PPR_2|PF13041.2|0.00056,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|4e-08,PPR_2|PF13041.2|0.00027,PPR_2|PF13041.2|8.4e-07,PPR_2|PF13041.2|8.9e+02,PPR_2|PF13041.2|1.2e+02,PPR_2|PF13041.2|2.3e+03,DYW_deaminase|PF14432.2|3.9e-40,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|0.46,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|0.0052,PPR_1|PF12854.3|4.2,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|4.6e+02,PPR_1|PF12854.3|11,PPR_3|PF13812.2|9.4e+02,PPR_3|PF13812.2|3,PPR_3|PF13812.2|5.4e+02,PPR_3|PF13812.2|9.2e+02,PPR_3|PF13812.2|8.6e+03,PPR_3|PF13812.2|18,PPR_3|PF13812.2|0.028,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|4.8e+02,PPR_3|PF13812.2|9.5e+02,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|7.5e+02 R_Transcript_171954:155-2578(+)
ATGATACAGTGTATCACTCAACTCAACCATTATTTTAACCCTTCCCTTCCTGTTATCACACGTCGCTTATTTCATGTTGTCCCAATTGAGGAATACACCCAGTTGCTAGAAACTTGCATTCAATCTAAATCACTCAAACATGGCAAGGCAATCCATCAGCATCTCCTTAGGAACAACAATGGCATCATTAGCTCCTTTGTTCTCGAAAAACTTACCCGTTTGTACGTTATATCTGGACAACTTGATTATGCACGCCGTTTGTTCGATGCAATTCCAGAACCAACAGTTATATTGTGGAATTTGATGATCAGGGCATGTGCCTGGAATGGACCATTTGAATGTTCAATTGATTTGTATACTAGGATGTGGGTGTCTGGTAGTGTTCCCACCAAATTTACATTCCCTTTTGCTCTTAAGGCGTGTGCGGGTTTGGATGCAATAGAATATGGAGAAGAGATTCATAATCATGTTGTAAGACTTGGGCTTATGTCAGATGTTTACATCTCCACTGCTTTGGTTGATTTGTATGCCAAGTGTGGAAGACTAGTTCGAGCCCAGAATGTGTTTAACAACATGCCATGTAGGGATATTGTGGCATGGAATGCCATGATTGGTGGCTTTTCAGTTCATGGGCTTTATGCTGACATGATGAGGTTGGTGGTTGGCATGCAGGAGGCTGGTATAAGCCCAAACTCATCAAGTGTTGTGACAATATTACCAGCAGTTGCACAAGCTAGTGCTTTGAGTGATGGGAAGGCTGTACATGCATATTCAATGAGACGGAACTATAGTCATGAAGTTGTGGTGGGCACAGGGCTTTTGGACATGTATGGAAAATGTGGGTGTATATCCTATGCTAGGACAATCTTTGACCTTTTGGTTATTAGGACTGAAATCACTTGGAGTGCAATGATTGGAGCATATGTTTTATGTGATCATATGATAGAAGCTTTGGAATTTTTTGCCCGTATGTTGCTTCAGGATTCTGGAAGTCCATCATCTGTTACTTTTGGATGTGCTCTCCGAGCTTGTACTAAGTTGATTGATATAAGAAATGGAAGAAGGATCCATGGTCACATTCTCAAATCAGGGCATATTTCAGATTTAATGGTTAGCAATACTATTCTTTCAATGTATGCAAAATGTGGTATATTAGATGATGCTGTCAGGTTTTTTCAAGAAATGAATCCAAGAGATAGGGTGTCTTACGGTGCAATGATTTCTGGATGTGTACAAAATGGTAACAGTCTGCTAGCCTTGAAGTTCTTCCGGAATATGCTAGCATCAGGAATAGATCCAGATGAGACTACTATGCTTGCGCTGCTACCAGCTTGTTCACATTTAGCTGCCCTGAAATATGGAGCCTGTGCCCATGGGTACTCTGTAGTCTGTGGGTTTGTGGCTGATACATCAATCTGTAATGCGCTGATTGATATGTATGCCAAGTGCGGAAAGGTGAAAACTTCGAGGGAAGTTTTTAATAAGATGCATAAGCGAGATATTATCTCATGGAATTCTATGATTGCTGGATATGGTATTCATGGCCTAGGCTTAGATGCACTTTCTCTGTTCCACAAATTAAGAACTGTCGGACTGGCACCAGATGATATAACATTTATTAGTCTTTTGATTGCTTGTAGTCACTCTGGTCTTGTTGAAGAAGGGAAATACTGGTTCGATGCAATGATCCGAGAGTTTCATATTGTCCCTAGAATTGATCACTACATTTGCATGGTTGACCTATTGGGTCGAGCAGGGCATCTGGAAGAGGCCAAAAGATTCATTGAGGAAACTTCATATACGTCGAATGTTCATGTTTGGAGTGCGCTGCTTGCTACATGCAAGATTCACAAGAATGTTGAGTTGGCTGAAGAAGCATCAAAGATGATCCAAAATTTAGGTCCTGAAAGTTCTGGGAATTTTGTCCTTTTGTCCAATATATATAGTTCTGCTGGAAGATGGGAGGACGCAGCTTCTGTTAGAATCATGCAGAGAGATCAGGGTTTCAAGAAAAGGCCAGGATGTAGCTGGGTTGAGATAAATGACACTGTTCATGCATTTGTTGGTGGAGATCGTTCTCACCCACAAACAGAACAGATATACAAGAAATTGGAAGAACTGCTAGCTGAGGTGAAAAAACTGGGATATCAAGCAGTTCCCTCCTTTGTATTTCAGGATGTTGAAGAGGAAGAGAAAGAACACATTCTTCTTCAACATAGTGAGAAGTTAGCCATTGCATTTGCTATTATTAGTTTGAGCCCAAGCCAGCCCATTTTTGTCACCAAGAATTTACGGGTTTGTGGTGATTGTCATGATGCCATAAAATATATAACACTTGTCACAAAGAGGGAGATAACAGTGAGGGATAACAGCCGTTTTCATCATTTCAAAGATGGTGTTTGCAATTGTGGAGACTTTTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_171954.p1 GENE.R_Transcript_171954~~R_Transcript_171954.p1 ORF type:complete len:808 (+),score=139.21,PPR|PF01535.16|4.2e+02,PPR|PF01535.16|0.0083,PPR|PF01535.16|0.066,PPR|PF01535.16|0.0023,PPR|PF01535.16|25,PPR|PF01535.16|0.00049,PPR|PF01535.16|0.019,PPR|PF01535.16|9.5e-06,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|0.13,PPR|PF01535.16|0.85,PPR|PF01535.16|4.5e+03,PPR|PF01535.16|2.2e+02,PPR_2|PF13041.2|4.7e+03,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|5e-06,PPR_2|PF13041.2|9.9e+03,PPR_2|PF13041.2|0.00056,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|4e-08,PPR_2|PF13041.2|0.00027,PPR_2|PF13041.2|8.4e-07,PPR_2|PF13041.2|8.9e+02,PPR_2|PF13041.2|1.2e+02,PPR_2|PF13041.2|2.3e+03,DYW_deaminase|PF14432.2|3.9e-40,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|0.46,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|0.0052,PPR_1|PF12854.3|4.2,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|4.6e+02,PPR_1|PF12854.3|11,PPR_3|PF13812.2|9.4e+02,PPR_3|PF13812.2|3,PPR_3|PF13812.2|5.4e+02,PPR_3|PF13812.2|9.2e+02,PPR_3|PF13812.2|8.6e+03,PPR_3|PF13812.2|18,PPR_3|PF13812.2|0.028,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|4.8e+02,PPR_3|PF13812.2|9.5e+02,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|7.5e+02 R_Transcript_171954:155-2578(+)
MIQCITQLNHYFNPSLPVITRRLFHVVPIEEYTQLLETCIQSKSLKHGKAIHQHLLRNNNGIISSFVLEKLTRLYVISGQLDYARRLFDAIPEPTVILWNLMIRACAWNGPFECSIDLYTRMWVSGSVPTKFTFPFALKACAGLDAIEYGEEIHNHVVRLGLMSDVYISTALVDLYAKCGRLVRAQNVFNNMPCRDIVAWNAMIGGFSVHGLYADMMRLVVGMQEAGISPNSSSVVTILPAVAQASALSDGKAVHAYSMRRNYSHEVVVGTGLLDMYGKCGCISYARTIFDLLVIRTEITWSAMIGAYVLCDHMIEALEFFARMLLQDSGSPSSVTFGCALRACTKLIDIRNGRRIHGHILKSGHISDLMVSNTILSMYAKCGILDDAVRFFQEMNPRDRVSYGAMISGCVQNGNSLLALKFFRNMLASGIDPDETTMLALLPACSHLAALKYGACAHGYSVVCGFVADTSICNALIDMYAKCGKVKTSREVFNKMHKRDIISWNSMIAGYGIHGLGLDALSLFHKLRTVGLAPDDITFISLLIACSHSGLVEEGKYWFDAMIREFHIVPRIDHYICMVDLLGRAGHLEEAKRFIEETSYTSNVHVWSALLATCKIHKNVELAEEASKMIQNLGPESSGNFVLLSNIYSSAGRWEDAASVRIMQRDQGFKKRPGCSWVEINDTVHAFVGGDRSHPQTEQIYKKLEELLAEVKKLGYQAVPSFVFQDVEEEEKEHILLQHSEKLAIAFAIISLSPSQPIFVTKNLRVCGDCHDAIKYITLVTKREITVRDNSRFHHFKDGVCNCGDFW*

Click here to download the sequence:
Link to NCBI Protein BLAST