Transcript Information: R_Transcript_17212.p1


Annotated TAIR IDAT1G21700.1
Annotated Gene NameSWITCH/sucrose nonfermenting 3C
Annotated Gene Symbol(s)ATSWI3C, CHB4, SWI3C
Annotation TypeOrtholog
Chromosome Positionchr1:7620156-7623978 | Reverse length=807
E-Value2.5E-261
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.251274073057
Replicate 28.9618355435419
Replicate 313.744042557692
Condition 2: 8 Hour
Replicate 113.10889599005
Replicate 214.507303828672
Replicate 318.859966156792
Condition 3: 24 Hour
Replicate 122.201879428743
Replicate 215.70764779524
Replicate 320.12601138283


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_17212.p1 GENE.R_Transcript_17212~~R_Transcript_17212.p1 ORF type:5prime_partial len:820 (+),score=166.62,SWIRM-assoc_1|PF16495.1|8.1e-27,SWIRM|PF04433.13|4.8e-21,Myb_DNA-binding|PF00249.27|6.4e-12,Myb_DNA-bind_6|PF13921.2|1.1e-05 R_Transcript_17212:1-2460(+)
TCCAATGCCTTCTTCTCCCTCAGGTACGTTAACCCTCCGTTTCTCTACTCTAAATCCAAATTCCTTCTTTTTTTTAACCCTAATTTCTCTCTTTTTTCTTCTACAGATGCTCGCCCTAAATGGCGGAGAACCCGCGGTCCGAAGACCACCTCGAAACGGCACCGTCCCGAGGACGACGACGACAACAACAACAACGACGACGATGACGAAAACGACGTCGCTCCAGCTGTCGAACCTGACGAAGATGAAGACCTCCACCCTACTACCACTCCTCCAAACCCTAAAACCCCTTTAAACAACAATCGGAGCGAAACCGAGGTCCTTTCCGGTGGGGCGGTTAGGGTTTCGGATTTCCCGGTGGCATTCAAGCGCGCCGTCAACCGGCCCCACTCCTCCGTCCTCGCAATTGTCGCTGCCGAGAAGGGTCAGGGACAGAGTGGTAATTGTAGTGGTAGTGGTGGTGGTGGTGTGGTTTTGGAGAATTTATCGTACGGACAGCTACAGGCATTGTCGGCTGTGCCCTCGGATAATCCGGCATTAGGGTCGGGGTCCGGGGATCAGGAGGGGCCGGTTGTGATTACTCCCCCTCCGATTATGGAAGGGAAGGGTGTTGTTAAGAGGTTTTGGGATCGGGTCCATGTTCTTCCTCTTCATGCAGATTGGTTTCAGCCGACCACAGTACACAGACTGGAGAGACAAGTGGTGCCACATTTCTTTTCTAGGAAGTCAGCTGAACACACGCCGGAAAAATACATGGACTGTAGGAATATAATTGTTGCCAAATACATGGAAAGCCCAGAGAAGAGGTTGTGGCTTGGGGATTGCCAAGAATTGGCTTTTGGGGTTGACAAAGAAGATCTCAGTCGAATTTTCCGCTTTCTTGATAACTGGGGTATCATTAACTACTGTGCCCCTCGCCCCCATCATGATTCTTGGAGTATTGAGTCATACTTGAGAGAGGAGCCAAATGGTGAAGTTCATGTGCCATCGGCAACTTTGAAGTCTATTGATAGTCTGATCAAGTTTGATAAGCCAAAATGCAGGCTCAAGCCTGGTGATGTGTACTTGTCATCATTACCATCAAAGGGCAATGATCTTTTGGACTTGGACAGTAGAATACGAGAGAAATTATCCGAGAATCATTGCAATTGTTGTTCTCAGCCCTTGTTAGTCGCATACTACCAGTCTGTTAAAGAGGTTGATACAATGCTGTGTTCAGATTGCTATTATGAGGGGAAATTCGTTATTGGCCATTCAAGCATAGACTTCACTAAAGTAGATCCTACAAAAGAGTATCCTGATCAAGATGGAGAAAGTTGGACTGATCAGGAAACGCTTCTGCTCCTCGAGGCAGTTGAAATTTATAATGATAGTTGGAACGAAATTGCAGATTATGTTGGAACTAAGTCAAGGGCACAATGCATTCTTCACTTTCTTCGTTTGCCCATGGAAGATGGCTTATTGGAAAACGTAGAAGTTCCCTCCACCTCCTGTGCATCTAATGGGTCACTCAAGGATGATCATTGCAGATCATATTCAAATACAAATGGTGTTCCATCAGGACCCCATGTTCAGGATTCTGATTCTAATTCAGATAGTAGGTTTCCATTTGCGAATTCTGGGAATCCTGTCATGCATCTGGTTGCGTTTTTGGCTTCATCTGTTGGACCTAGAGTTGCTGCAGCTTGTGCCCATGCATCTTTGGCAGCCTTATCTGAGGAGGATAGATCAGTGCATTGCAATAGGATGGATTCTGATGATGGTGCTTTGGAAACAAGAAATTCTAGTCAGCAGAAAGATGAGAACTCGGCTGCACAAGGTTCTCGGGGTCCAATCAATGCAAATACAGAAGCTTCTCCACTACCAGTGGAGAAAGTTAAATCGGCTGCAAAAGCTGGTCTTGCGGCCGCAGCAATGAAGGCAAAACTGTTTGCAGACCATGAAGAGAGAGAAATTCAGAGGCTGTCTGCTAGTATCATAAATCATCAGCTGAAGAGATTGGAGTTGAAGCTGAAACAATTTGCAGAAGTCGAGACATTGTTGATGAAGGAATGTGAACAAGTGGAAAAAACAAGACAGAGACTTGCTGGGGAGAGGGCACGTGCTATAGCAGGTAGATTTGGGCCCAGTGGAGTTGCATCACAAATGAACTTGCCTGGTGTTGCTCCGCAAGTTATGAATAATAATATCAGCAGCAGCAGACCACCAGTTATGTCGGCTTCACCTTCGCAGCCTAGTGTTTCTGGATATTCCAATAACCCGATGAGCCATGCACAGATGCCATTCATTGCTCGTCAGCAAATGTTCTCTTTTGGACCTCGTCTACCCCTTTCAGCTATACAGCCTTCTTCCTCAGGGCCTACTTCAGGTGTCATGTTTGGGGCTCAAGGTAGTGGACAATCTTCTCTTAGTCATCCCATGTTGAGGCCTGTACCAGGAACAAGCTCTGGCATGGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_17212.p1 GENE.R_Transcript_17212~~R_Transcript_17212.p1 ORF type:5prime_partial len:820 (+),score=166.62,SWIRM-assoc_1|PF16495.1|8.1e-27,SWIRM|PF04433.13|4.8e-21,Myb_DNA-binding|PF00249.27|6.4e-12,Myb_DNA-bind_6|PF13921.2|1.1e-05 R_Transcript_17212:1-2460(+)
SNAFFSLRYVNPPFLYSKSKFLLFFNPNFSLFSSTDARPKWRRTRGPKTTSKRHRPEDDDDNNNNDDDDENDVAPAVEPDEDEDLHPTTTPPNPKTPLNNNRSETEVLSGGAVRVSDFPVAFKRAVNRPHSSVLAIVAAEKGQGQSGNCSGSGGGGVVLENLSYGQLQALSAVPSDNPALGSGSGDQEGPVVITPPPIMEGKGVVKRFWDRVHVLPLHADWFQPTTVHRLERQVVPHFFSRKSAEHTPEKYMDCRNIIVAKYMESPEKRLWLGDCQELAFGVDKEDLSRIFRFLDNWGIINYCAPRPHHDSWSIESYLREEPNGEVHVPSATLKSIDSLIKFDKPKCRLKPGDVYLSSLPSKGNDLLDLDSRIREKLSENHCNCCSQPLLVAYYQSVKEVDTMLCSDCYYEGKFVIGHSSIDFTKVDPTKEYPDQDGESWTDQETLLLLEAVEIYNDSWNEIADYVGTKSRAQCILHFLRLPMEDGLLENVEVPSTSCASNGSLKDDHCRSYSNTNGVPSGPHVQDSDSNSDSRFPFANSGNPVMHLVAFLASSVGPRVAAACAHASLAALSEEDRSVHCNRMDSDDGALETRNSSQQKDENSAAQGSRGPINANTEASPLPVEKVKSAAKAGLAAAAMKAKLFADHEEREIQRLSASIINHQLKRLELKLKQFAEVETLLMKECEQVEKTRQRLAGERARAIAGRFGPSGVASQMNLPGVAPQVMNNNISSSRPPVMSASPSQPSVSGYSNNPMSHAQMPFIARQQMFSFGPRLPLSAIQPSSSGPTSGVMFGAQGSGQSSLSHPMLRPVPGTSSGMG*

Click here to download the sequence:
Link to NCBI Protein BLAST