Transcript Information: R_Transcript_172392.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value7E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5799063809793
Replicate 20.85067883822939
Replicate 31.4343076947867
Condition 2: 8 Hour
Replicate 11.3077165441439
Replicate 21.894292016012
Replicate 31.9388460699493
Condition 3: 24 Hour
Replicate 11.9448602808
Replicate 21.0154354921997
Replicate 31.3301919975462


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_172392.p1 GENE.R_Transcript_172392~~R_Transcript_172392.p1 ORF type:internal len:543 (+),score=81.51,UBN2|PF14223.2|9.8e-16,UBN2_3|PF14244.2|1.6e-15,UBN2_2|PF14227.2|4.4e-07,gag_pre-integrs|PF13976.2|3.1e-06 R_Transcript_172392:1-1626(+)
GAAAAGCTTCCAATCTTATATGGTATCAGATACGGTCCTTCTCTCAAGTTTTCTTTTCTCCATCTTGCTTCTTCCTTAGTGCTCATCATGACAAACTCTGATGATCAAGCTCTTATCTCCAACTCCAACGACCCCACAAAGCCCTTTACTGTTCTTCATTTTCATAATGCTATTAAGCTTACTCCTAATAATTATATTGCTTGGAAAACTCAAATTCAAGCCACATTACTGGGTTATGATCTATACAAATATGTTGATGGCTCTTTTCCTTCTCCATCCACGACAATTACTGGTACCGTGCAAGATAATTCTGCCTTTATTCCTTGGTTTCGTCAAGATCGCCTTGTTTTTGGTGCTCTTGTTGGTACCTTAAGCCAAGAACTTGTCCCTCTTATCTCTCAGTCTGGTACAGCCTGTGAAGCTTGGAATATTCTTGCCTCCACCTATGCCAACCCATCACGTGGTCACTTCAAGCAGATCAAGGATCGTTTGGCCAAAATAACCAAAACGACTCAAAGTATCTCTGAGTATATGCAGTCCATTAAGCAATGTACTGATCATCTAGCTTCAATGGGGAAACCTATGGATCATGAAGATATTATTGATAAAGTACTTCATGGTCTTGATTATGATACCTACAAACCTGTGATTGATGCGGTTGATGCAAGGGATTCTCCCATTTCCTTTGAGGAGATCCATGAAAAGCTTATTACCAGAGAACTCATGAATTCCTCAATGAGAACAACTAGTCCTTTTCCCGCTACGGTTCATGCTGCCACATACCGTCAGTCTAGCAGCACTTCTCGGTCTCCGCAGTCTTTTAATAGGGCTGCTCCAGCCCTTCTTCCTACTCCACAGGGTGCACAGCCTCCACGACAGCCACGCCCCTATCTTGGCAAATGTCAGTTTTGCCGTACTCAAGGTCATGCTCTTGATCAATGTCCTATGTTCAAGGCTCGGTATCCTAATGTTCAAGTGCCTACCGTTGGTCAGGCACGGGCTGCCCAAAAAGGGTTTCAGTCTCCTCAGGCTCATCTTGTCACTAGTGACATTCATTCGCCGTCAAATGGGTGGCTATTAGACAGTGGTGCTTCACACCATGTTACTCGTGATCTTGCTAATCTCTCACTTCATGCTCCCTACGATGGTACAGAGGAACTCATAATTGGTGATGGCTCATCTCTTCCCATTCAAAACACTGGTTCATTCTCTATCTCTACACCATCTGCATCTTTTCATTTTACGAATGTCTTACATGTCCCTTCTATATCTCGAAATATTCTTTCCATTTCAAAATTCTGTGAAGAAAACAATACCAGTATTGAGTTCTTACCATCTCTTTTTCGTGTCAAGGGGCTTTCGCAGGGTCTGACACTCCTACAGGGTCCAACTAGAGCTGGGGTCTATGAATGGCATCCAAGTCCTCCTCGTGTCTACACATCTCTCAAATTGCCTATGCACGATTGGCATCACAAACTTGGCCATCCTTCTTCAACCATTCTTAGATTTTTAAATTCCAAATTTAATTTAGCTATTTCTGATTTCTCTATGTCACATTGTAATTCTTGCAATATGAATAAAAGTCACAAATTGCCTTTTTCTATCTCAACTCTCTCATCCAAAGCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_172392.p1 GENE.R_Transcript_172392~~R_Transcript_172392.p1 ORF type:internal len:543 (+),score=81.51,UBN2|PF14223.2|9.8e-16,UBN2_3|PF14244.2|1.6e-15,UBN2_2|PF14227.2|4.4e-07,gag_pre-integrs|PF13976.2|3.1e-06 R_Transcript_172392:1-1626(+)
EKLPILYGIRYGPSLKFSFLHLASSLVLIMTNSDDQALISNSNDPTKPFTVLHFHNAIKLTPNNYIAWKTQIQATLLGYDLYKYVDGSFPSPSTTITGTVQDNSAFIPWFRQDRLVFGALVGTLSQELVPLISQSGTACEAWNILASTYANPSRGHFKQIKDRLAKITKTTQSISEYMQSIKQCTDHLASMGKPMDHEDIIDKVLHGLDYDTYKPVIDAVDARDSPISFEEIHEKLITRELMNSSMRTTSPFPATVHAATYRQSSSTSRSPQSFNRAAPALLPTPQGAQPPRQPRPYLGKCQFCRTQGHALDQCPMFKARYPNVQVPTVGQARAAQKGFQSPQAHLVTSDIHSPSNGWLLDSGASHHVTRDLANLSLHAPYDGTEELIIGDGSSLPIQNTGSFSISTPSASFHFTNVLHVPSISRNILSISKFCEENNTSIEFLPSLFRVKGLSQGLTLLQGPTRAGVYEWHPSPPRVYTSLKLPMHDWHHKLGHPSSTILRFLNSKFNLAISDFSMSHCNSCNMNKSHKLPFSISTLSSKA

Click here to download the sequence:
Link to NCBI Protein BLAST