Transcript Information: R_Transcript_172517.p1


Annotated TAIR IDAT4G09775.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:6156629-6157054 | Forward length=141
E-Value7E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.67603559091551
Replicate 20.51842717077279
Replicate 30.28279922958213
Condition 2: 8 Hour
Replicate 10.4534419434675
Replicate 20.4140904044664
Replicate 30.33614093741457
Condition 3: 24 Hour
Replicate 11.4171485943027
Replicate 20.40843072019588
Replicate 31.7564207464794


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_172517.p1 GENE.R_Transcript_172517~~R_Transcript_172517.p1 ORF type:complete len:162 (+),score=29.58,RVT_3|PF13456.2|3.8e+02,RVT_3|PF13456.2|5.1e-10 R_Transcript_172517:337-822(+)
ATGGATGATTTTGGAGCTTTTATTGCTGCAGCTTGGGGAATATGGACCGATCGATGCAAGATGCTGTATGATGATGAGTATGAACATGGAGAAAGAGTGTGTGACAATGCGAAAAAATTTGTGATGCAATACAGAGAGGCTAAAGACCGAACTGATGTACAACAAGTGGGAAAGAAGGCTGGATGGGCACCGCCTAGTAATGGGCTGTGGAAGTTAAATGTTGATGCAGGGAAATTGGGAGAATGGGGCTGTGGATGGGGGATGGTGGTACAAGATGGAGATGGCGAAATTGTGATGCAGGGACTTCACCAGATGCAGAGACAGTTTGATGCGGAAATAGAGGAGGCACGCGCGCTTCTCTTTGGGCTACATCTAGCATGGGAGGCTGGGTATAGATCAATTATTACCGAAGGTGATTGTCTCAGCATAATTTCCAAACTCAAGCGCAAACAGGAGGTGCGGTCCCCTTTAGTTTACATTCTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_172517.p1 GENE.R_Transcript_172517~~R_Transcript_172517.p1 ORF type:complete len:162 (+),score=29.58,RVT_3|PF13456.2|3.8e+02,RVT_3|PF13456.2|5.1e-10 R_Transcript_172517:337-822(+)
MDDFGAFIAAAWGIWTDRCKMLYDDEYEHGERVCDNAKKFVMQYREAKDRTDVQQVGKKAGWAPPSNGLWKLNVDAGKLGEWGCGWGMVVQDGDGEIVMQGLHQMQRQFDAEIEEARALLFGLHLAWEAGYRSIITEGDCLSIISKLKRKQEVRSPLVYIL*

Click here to download the sequence:
Link to NCBI Protein BLAST