Transcript Information: R_Transcript_17266.p1


Annotated TAIR IDAT5G04560.2
Annotated Gene NameHhH-GPD base excision DNA repair family protein
Annotated Gene Symbol(s)DME
Annotation TypeOrtholog
Chromosome Positionchr5:1309786-1318091 | Forward length=1987
E-Value2.5E-258
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.614086899928
Replicate 29.6386833653925
Replicate 312.425553291735
Condition 2: 8 Hour
Replicate 110.785586920509
Replicate 212.522543070277
Replicate 314.632513835119
Condition 3: 24 Hour
Replicate 115.900962414367
Replicate 213.160043978908
Replicate 313.422846520694


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_17266.p1 GENE.R_Transcript_17266~~R_Transcript_17266.p1 ORF type:complete len:1991 (+),score=391.58,RRM_DME|PF15628.2|1.5e+04,RRM_DME|PF15628.2|5.7e-52,Perm-CXXC|PF15629.2|3.1e-11 R_Transcript_17266:543-6515(+)
ATGATGGAAACTCATGAGGGAAAAACAGTTCCCATTGTAAAAGAGTTCCAGATACAAGGCTCTTGGACTCCAGTAACCCCAGTAAAGCCAATACTACCCCGGCCGAGACCGATCTATGAAGATGGGCAAGGAGGGGTTTTAGGACAAGCCTACATGAGAGAATCAGAGGATTATCTCTCAAGATTTTCATACCAAAATCAAGCACACACACTTTTATCATGTTCAATAAGCTCTGCAGAAAGGGGCAACCCATATAACAGTAGTAATATTAACAGCCATAATAATAATGATGATAATACCACCATTTGGGATGATCCTCATGGTAGTACAACTCCCTTACCAGGGAGAATCAATTCGCAAAGAGAGAATGGCGAATCGCAAAGACGGGGTTTGGAGGATTACTTGCCTCATTGGAGTAGTCAAGGCAAGAGAAGAATGGCCTCCTCATTTGGAACAGGAAACCCAGTTCCAAGTAATTACCCCTCATTTAGCTCTTGGGAGTCGCCTCTCTCCTGGAAAAATAATGGGTTGAGAGAAAATGTCAGCATGCTACAGCATAATAATTCCCATGACCCTCTTGCTCAATTTGACAATTTCTCCTTTGGAGAGCTCTTGGCCGCGAATGGTTCAGCATTAGAGCCTTCAGTGATCTCATCAAGCCAAGGAGATACCGGTGGTACTCCAAGAGGTTCCATTTATTCCGGTTGGAATACTCAACCTCAAGACAGCAGATTCGACAGCAGTGCAATGTACAGGAATCAGGACTCTTTTCCTGGACTGAACCAGCAAATCAATGGCATCTGTGTACAAGAAATGCACGGTGCTTTTCCCCATCAGCTTTGGAGCAATATTAACTCCCCTCCAAGCACAAAGCATGCAAATGGAAAGAATTCTACTTTTGCTCCTCCAACTCCAGATTTACAGAGCAGAGCTGAGAGTAATGTGGCTTCAGGAAATGCAATACCTGGACCAAATCAAAGGCCTGATGAGCAAAACGGCTTGCAGGAACATGAAGCCGCTGCTGCAATGATCAATCTTCACGACCTCAACCATAAAGATGTCACAGAGCCCACTACAGATTCATCACTTGGTAAAGTCTCCGCAATAGTGGAGGAGAATCAACACCCTGAGAAGGAAGCCGATCAGATTATTGACCTGAACAAAACACCACAAAAAAAACCACGAAGAAAAAGGTACATGCCTAAGGTGGTCAATGAAAATAAGCCTAAACGGACCCCAAAACCTAAGACCCCCAAGCCCACTGATGCCAAAGAAAATCCGAAACCTAAAAGGAAGTATGTGCGAAAGAACAAGAGCACACCATCAACAACTTCTCCTGAAGGAACAACAGAACCTAATGATCCTAAACCTACAGAACCAAAAGCCAAATCCTGCAAAAAGTCCTTAAACTTTGATTTGAATGGGCAAGTCCCAGAACATAACCCTGTGCCTATGTCAAAGGATGGCTCATGTGCAGACCCAAATGACTCTCACGTTGCAGGAAACCAATCCAGCAACACTGTTGATCTTAGGCAGGGAGAAGAATTGATGGTCAAATCATCGCAAGTAGGCATAGCATATGACCTGAACTGTAGCCTGAGTCAGGAACCAAGAAACTATATCTCTCTTCCTGAAAAAGTTAACCTAGATGATTCACAACCTGACCACACTGTTCCCACTGAAGGGAATGAGAAGGCTACTAGCAGCTCATTAGGACCCAATGCTGAAGTGCCATCCAGAGAAGATGCTTGCTTGGCACAAAGTCCAAACTCCAGTCCTTGCACAAGTTCTAATGAAGCGGTTCAAGCAAGAGGATCCAAGAGGGGGCATTCCAGTGTGCATGATACCACAGATGTTGATGCTGGAAATTTGGCTGCCAATTCCAGTAAATCTTGGCATACAAACGACACATTTTTAGGGGATGAAAATACCGAAGGGGTTCCAACCTTTCCCTTTCCAGGGATTCACAAGAAAAAGAGAACTGAGAAGGGACAAAGGTCGCACACATCAAGCACATCTTCTTCTGTTACGGCTTCTGAAGACTTTAGCCAAGCAGCTAATATTCATATTCATCCAAGAGTTGATCCCGCTGCATCAAAGTACTACTACTGCAATCCTGCCTCTTATGGAAACAATCTGGTGACAAATAGTCAGGTACAATTGTTGATGAGAAGTGAAGAAAACAGAGCACAACTTTTGAATACTTGGGTTGACATTGCAAGGCTAAAGAAGAAAAAGCGAACGAAAGGAGCGACCCGTGTCCGTGATCTGGCTCCGCTAAAAGGAATTGCATCTGTCTCACCTGCCAAACCAGCAATCAAACGGCCGGGCAGAAGGAAGAATGACACTTTAAATAAGCCTTATCCTGGCACAGGCAATATTAATCTGTCAAATGGTGTCCATTCCTGTATGGAGGCCCTGAGTGAGGACACCCATGGAACCCCAAGATCAAAAAGGAGATACAGAAAACAGAATTCTGCAATCAATTCAAGGACATACAAGGTGAACCAGCCTTTGGAACTGGTGCTGTATGATGGTAACCAGGCTATTAGGAACACAACAGTTCCCGTTTCAGTGGTACCATGGGTAAATGTCTCTGTCGAAGCAATAACCGAGGGAATGAAGAGGCTCGATATCAATAGAAAAGGCCGCAAAATCTCACGTCAAGAACAGAAGGCACTTGTCCCTTACAATGTAAACAACCAGGCACAGAATGCAATTGTTCCTTATGAAAACAATGGGACTATTGTTCCATTTGAACCCATGAGAAGGCGGCGTCAAAGGGCCAAAGTTGACCTTGATGATGAGACTACACGAGTGTGGAGACTTCTTCTCGAGAACATTGATAACAAAGGTATTGACGGCACTGATGAGGAGAAAGCAAAATGGTGGGAAAATGAACGAAGTGTCTTTCAAGGACGTGTGGATTCATTCATCGCCCGCATGCGTCTTGTTCAAGGGGATAGACGCTTCACTCCATGGAAAGGATCTGTCTTGGACTCTGTCATTGGAGTTTTTCTTACTCAGAATGTGTCTGATCACCTGTCTAGTTCTGCTTTCATGTCGCTCGCTGCACGTTTTCCTCTCAAGCGTGAGAGTACTGAAAGTGCACTTTCGGAAGAGGCCTCAAGTGCCTTGGTTGCTGAACCAAACTTTTGTATTATTGATGCTGAAGAAAGTATCACATGGATTGACAAGCCATTGGATCAACCAATTTGTGACATGGATTCTAGGATAATCCCTGAGATTGAACATAGTGAAGAAAGAGAGGTAGTTAATAGCAAAGAAATGATTGGAGGTGCCCCTGGTTCAGTTAGCCCCGTAGATTACTCTAGTGAAAGCAGTCAAAAGGCCCCCGTTGAAATAAGAGTACATAATGCAAATATCCAAACCACAGAGACAGAAGCAACAAGTATTGTAGGAGATGATAGAGCAAGAGATGATGCGACTTCATCACAGCAGTCAGTAATTTCATCCCAAAACTCCGTCAACTCCCCAAATTTGCAGACAAAGGGGATGATGGGTACATTTTCAGAGAACAATTCAAGAGCTCAGAACAGTTCAAATTGCAATTATTATCATTGTTCTTCTTTTACTGGGCTGCTAAAAATGGCCGAAGCTCCCTTCCATTATGGTTTGATGGGTCAACTAGAATGTATGAACCATGTTGTGAAAGATTCTCCCGAAGCACCAGGTATCTCTGCAAATGATTACCTGTTGCATCTGAAAACAGATTTCCGTTTACAAGGCACACGCAGCAGTGAACTGCTAGAAGTAGAAAGTAGATCTTCTAATACATCCAGAAAAGATGAAAATAGCACAACTGAAATAAGCAATCTCTCAACAGAATCAACAGTGCAACATCTTGTAATGGATAAGAGTTCAGATGGCATTCAGAGACCTTTTGCTGAAAATGTGAGCTCTTGCTACGTCCTTGAAGGAGAGAATATGGTTATACAATCAGAAGGGCAATCAATGAAAGAAATACAAGTTAATGTCTCTTCATCTGCCCAAGCACAAACAAGTTCAATTTGGGGACATCCAAATTTGCTAAAGTCACTACAACATAATGATGATGTTACTGAAAGTACCACAGCTTTGGTCAGGAAAAACAATGAGCAGAAGGAAAACAGACAGAAGTCAGGGCACAACCATGTATCAGATGGGGTTTCTGATATAACCAATGTTGATCCTAGTAAGCCAAAGAAAGGCAGGGCTGGAAAGGAGAAAAGAAACCCATACAACTGGGACAATCTGCGAAAAGAGGCTCAAGTTAATGGTATAAAAAGAGAAAGAACAGCCAACACAAGGGACTCACTAGACTGGGAAGCAGTAAGACATGCTAATGTCCATGAAATTGCTGACACCATTAAAGAGAGGGGCATGAATAACATGCTTGCTGAAAGAATAAAGGATCTCTTGGACAGACTAGTCAAGGACCATGGCAGTGTCGACATGGAGTGGTTGAGAGATATTCCCCCAGACAAAGCAAAAGAATACTTACTGAGCTTTAGAGGCTTGGGTTTGAAGAGTGTAGAGTGCGTCCGACTTTTGACACTGCACCATCTTGCATTCCCAGTCGACACAAATGTTGGCCGAATTGCTGTACGACTTGGGTGGGTTCCTCTCCAGCCTCTACCAGAATCGCTTCAACTACATCTTCTAGAATTGTACCCAGTCTTGGAGTCCATTCAGAAGTACTTATGGCCACGGCTATGCAAGCTTGATCAAAAGACATTGTATGAACTTCATTACCACATGATCACCTTCGGAAAGGTATTTTGCACAAAAAGGCAGCCTAACTGCAATGCATGTCCCTTGAGAGGAGAGTGCAGGCATTTCGCTAGTGCATTTGCAAGTGCTAGGCTTGCTCTCCCAGGCCCGGAAGAAAGAAGCATTATGCCCTCAGCTGGGAGCAATTCAGCACATCTTCATCCTCAAGCTAATATCAACCCTTTACCATTGCCTCCCTCTTGGAGCAACCAACACCAAAACACAAACTTTGGAAGCAACAAATATCCACCTATGATTGAAGTTCCATCTACCCCGCTGTCACTGCCCTTGCCACAGACAATCCATCACTTGCAGAGGCCATCTCAAATTAACTGTGAGCCAATTGTGGAAGTTCCTGCCTCACCAGAACCAGAACCAGAACCAGAACAGGAACATACATTAGGCGACATTGAAGATACTTTCTATGAGGATCCTGATGAAATTCCAACAATCAAGCTTAACATGAAACAGTTCACTCAGACACTTCAGAACTTTATGCAAGCAAACAAGGAACTTCAAGAGACTGGAATGTCAAGGGCCTTGGTGGCATTGACACCTGACACTGCTTCTATTCCTACACCAAAGCTCAAGAACATCAGCCGGCTAAGAACGGAGCATCATGTCTACGAACTTCCTGACACACATCCTCTTTTAAAAAACTTGGACAAACGGGAACCTGATGATCCGTGTTCATACCTTCTTGCAATATGGACCCCAGGTGAGACAGCAGACTCAATCCAACCTCCTGAAAGAAGATGCAACTTTGAAGATCCAGGCATACTTTGCAATGAGGAGACATGTTCCTACTGTAGCAGTCAGCGAGAAGCAAACTCCCAAATTGTGCGGGCAACACTTTTGATACCGTGCAGAACAGCGATGAGAGGCAGCTTCCCACTCAATGGAACTTACTTCCAAGTCAATGAGGTGTTTGCAGACCATGAATCAAGCCTTAACCCACTTCATGTGTCCAGAGAATTGTTGTGGAATCTGCCAAGACGAACTGTATACTTTGGAACCTCTATACCAACCATATTCAGAGGTCTAACCACTGAAGATATTCAGCATTGCTTCTGGAGAGGATATGTTTGTGTGAGGGGGTTTGATCAAAGAACAAGAGCACCTCGTCCACTCATGGCAAGATTGCATTTTCCAGCCAGCAGGATGCCGAGGGGCGCAAAAGGTAAGCCAAATGATGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_17266.p1 GENE.R_Transcript_17266~~R_Transcript_17266.p1 ORF type:complete len:1991 (+),score=391.58,RRM_DME|PF15628.2|1.5e+04,RRM_DME|PF15628.2|5.7e-52,Perm-CXXC|PF15629.2|3.1e-11 R_Transcript_17266:543-6515(+)
MMETHEGKTVPIVKEFQIQGSWTPVTPVKPILPRPRPIYEDGQGGVLGQAYMRESEDYLSRFSYQNQAHTLLSCSISSAERGNPYNSSNINSHNNNDDNTTIWDDPHGSTTPLPGRINSQRENGESQRRGLEDYLPHWSSQGKRRMASSFGTGNPVPSNYPSFSSWESPLSWKNNGLRENVSMLQHNNSHDPLAQFDNFSFGELLAANGSALEPSVISSSQGDTGGTPRGSIYSGWNTQPQDSRFDSSAMYRNQDSFPGLNQQINGICVQEMHGAFPHQLWSNINSPPSTKHANGKNSTFAPPTPDLQSRAESNVASGNAIPGPNQRPDEQNGLQEHEAAAAMINLHDLNHKDVTEPTTDSSLGKVSAIVEENQHPEKEADQIIDLNKTPQKKPRRKRYMPKVVNENKPKRTPKPKTPKPTDAKENPKPKRKYVRKNKSTPSTTSPEGTTEPNDPKPTEPKAKSCKKSLNFDLNGQVPEHNPVPMSKDGSCADPNDSHVAGNQSSNTVDLRQGEELMVKSSQVGIAYDLNCSLSQEPRNYISLPEKVNLDDSQPDHTVPTEGNEKATSSSLGPNAEVPSREDACLAQSPNSSPCTSSNEAVQARGSKRGHSSVHDTTDVDAGNLAANSSKSWHTNDTFLGDENTEGVPTFPFPGIHKKKRTEKGQRSHTSSTSSSVTASEDFSQAANIHIHPRVDPAASKYYYCNPASYGNNLVTNSQVQLLMRSEENRAQLLNTWVDIARLKKKKRTKGATRVRDLAPLKGIASVSPAKPAIKRPGRRKNDTLNKPYPGTGNINLSNGVHSCMEALSEDTHGTPRSKRRYRKQNSAINSRTYKVNQPLELVLYDGNQAIRNTTVPVSVVPWVNVSVEAITEGMKRLDINRKGRKISRQEQKALVPYNVNNQAQNAIVPYENNGTIVPFEPMRRRRQRAKVDLDDETTRVWRLLLENIDNKGIDGTDEEKAKWWENERSVFQGRVDSFIARMRLVQGDRRFTPWKGSVLDSVIGVFLTQNVSDHLSSSAFMSLAARFPLKRESTESALSEEASSALVAEPNFCIIDAEESITWIDKPLDQPICDMDSRIIPEIEHSEEREVVNSKEMIGGAPGSVSPVDYSSESSQKAPVEIRVHNANIQTTETEATSIVGDDRARDDATSSQQSVISSQNSVNSPNLQTKGMMGTFSENNSRAQNSSNCNYYHCSSFTGLLKMAEAPFHYGLMGQLECMNHVVKDSPEAPGISANDYLLHLKTDFRLQGTRSSELLEVESRSSNTSRKDENSTTEISNLSTESTVQHLVMDKSSDGIQRPFAENVSSCYVLEGENMVIQSEGQSMKEIQVNVSSSAQAQTSSIWGHPNLLKSLQHNDDVTESTTALVRKNNEQKENRQKSGHNHVSDGVSDITNVDPSKPKKGRAGKEKRNPYNWDNLRKEAQVNGIKRERTANTRDSLDWEAVRHANVHEIADTIKERGMNNMLAERIKDLLDRLVKDHGSVDMEWLRDIPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQKTLYELHYHMITFGKVFCTKRQPNCNACPLRGECRHFASAFASARLALPGPEERSIMPSAGSNSAHLHPQANINPLPLPPSWSNQHQNTNFGSNKYPPMIEVPSTPLSLPLPQTIHHLQRPSQINCEPIVEVPASPEPEPEPEQEHTLGDIEDTFYEDPDEIPTIKLNMKQFTQTLQNFMQANKELQETGMSRALVALTPDTASIPTPKLKNISRLRTEHHVYELPDTHPLLKNLDKREPDDPCSYLLAIWTPGETADSIQPPERRCNFEDPGILCNEETCSYCSSQREANSQIVRATLLIPCRTAMRGSFPLNGTYFQVNEVFADHESSLNPLHVSRELLWNLPRRTVYFGTSIPTIFRGLTTEDIQHCFWRGYVCVRGFDQRTRAPRPLMARLHFPASRMPRGAKGKPNDE*

Click here to download the sequence:
Link to NCBI Protein BLAST