Transcript Information: R_Transcript_172743.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.72146090730114
Replicate 20.91288262679557
Replicate 30.90540464806927
Condition 2: 8 Hour
Replicate 10.96782074890297
Replicate 21.767658643572
Replicate 31.7218919165585
Condition 3: 24 Hour
Replicate 11.9055887422205
Replicate 21.1332741722431
Replicate 30.95163933421293


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_172743.p2 GENE.R_Transcript_172743~~R_Transcript_172743.p2 ORF type:complete len:253 (+),score=42.95,UBN2_3|PF14244.2|7.8e-21,Retrotrans_gag|PF03732.13|2.9e-09,Retrotrans_gag|PF03732.13|3e+03 R_Transcript_172743:2670-3428(+)
ATGGTTATATCATGGTTATTGAATGCATTGAGTAAAGACATAGTAGACAATGTGTTGTATAGTGAAACTACTGAAGAAATATGGAAAGAATTAAACGAAAGATTTGGCCAATCGAATGGTCCACAGTTGTATAAGTTGCAGAAAGATATCAATGAGATATCTCAGGGTAGCACTGATGTACCAGTGTATTTCACCAAAATGAAAAGATTGTGCGATGAGTTGAATTCAATTGATGCCCTACCTGTTTGCACTTGTGGTGCTGTCCAAGAAATAAATAGGAGAGAACAAGAAAGGAGACTCATACAATTTTTGATGGGCTTGAATGATGATTATACAGTAGCCAGAGGCAACATACTGATGATGAAACCACTTCCAAGTGTATCAACTGCATATTCTCTATTGATGCAAGATGAAAAACAAAGAGAAACAAAATCTACTGTTACCAATTTTACTAGTGATGCATCCTCTTTCCTAGCAAATAATCAAAGACCTTTCATGAGATCTGATTCAAAAGGCAACAATATTCAGAGGTTTGATCCTAGAAGGGAACCAAGAAAGACTGGAATGTTCTGTACTTATTGTAAAAGGCAGGGACATACTGAGGATAAATGCTGGAAGAAACATGGATATCCACCTCAATATTCACAAAACTCATACAGAAATGACAACTATAAAGGGAAAAGAATGGCTAACAACGTCCAAGGGAAGTATTTCAATGGTAATCTGATGGATGAAGAACAACAGTACAGTGAAAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_172743.p2 GENE.R_Transcript_172743~~R_Transcript_172743.p2 ORF type:complete len:253 (+),score=42.95,UBN2_3|PF14244.2|7.8e-21,Retrotrans_gag|PF03732.13|2.9e-09,Retrotrans_gag|PF03732.13|3e+03 R_Transcript_172743:2670-3428(+)
MVISWLLNALSKDIVDNVLYSETTEEIWKELNERFGQSNGPQLYKLQKDINEISQGSTDVPVYFTKMKRLCDELNSIDALPVCTCGAVQEINRREQERRLIQFLMGLNDDYTVARGNILMMKPLPSVSTAYSLLMQDEKQRETKSTVTNFTSDASSFLANNQRPFMRSDSKGNNIQRFDPRREPRKTGMFCTYCKRQGHTEDKCWKKHGYPPQYSQNSYRNDNYKGKRMANNVQGKYFNGNLMDEEQQYSEN*

Click here to download the sequence:
Link to NCBI Protein BLAST