Transcript Information: R_Transcript_172916.p1


Annotated TAIR IDAT1G50060.1
Annotated Gene NameCAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:18551186-18552446 | Forward length=161
E-Value3E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.30677245302048
Replicate 20.11762633286441
Replicate 30.51331624865328
Condition 2: 8 Hour
Replicate 10.75446642694593
Replicate 20.50108418691732
Replicate 30.61013817211385
Condition 3: 24 Hour
Replicate 11.3504592486885
Replicate 20.12355887333657
Replicate 30.5517908744596


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_172916.p1 GENE.R_Transcript_172916~~R_Transcript_172916.p1 ORF type:5prime_partial len:357 (+),score=57.38,CAP|PF00188.22|5e-20 R_Transcript_172916:3-1073(+)
CATATGAAACTTGTTTTCATTTTTGCTCTGGCAGTTGCCTTTACCTGTGTCGCCAACGCAGCCTTCAATCCTCCTGTTTACAGGCAAGGTGACAAGAGATGGGGAAGTAAACAACTCGGCTTTGGATCTTATACCATTGCTAAAAAGGGTTGTTTCCTCACTTGCCAAACCTCTATGATAGCTAGTCAAGGTATCACAATTAATAATGGAGAAACTCCTGATCCTGGAAATATGAACACTTGGTTCAAAAATAATGGTGGATTCCTTAGCGGGGGTGGAATGTTGAACTACAAAGCTCCTGAGAAATTTGGTTTCAAATACGAAAAGGTGACTTCTAAATCAAGTGCCGTTGCTGCTTTCAATTCCGGAAAGTTCGTTCTTTGCCACGTTGAAAACTTGTCACATTGGGTCTTGGTTACTAGTGTCACTTCTTCTGGATATGAAGTCATGGACCCTGCTGGTGTTGAAACTTCATACAAATTCTCTCAAGTGCCAGAATACGCTGTTTACACTGCTCCTGCAGGTAAACCTGGTACCAAATCATCATCATCAGCTGAATCTACACCTGAAGCAGACCCCATTTCCAGACCTGAACCTGAACCAGAAACTTCCTTCGAAGACGAGCCACAAGAACAAGATGACGCCTTCGTTGAAGAGTCTTTGAGCATTCAAAACGAATGGAGATATGCCGTAGGTGTTCCTAATCTTATTTGGAATGCCACTCTTGCTGCAAGTGCACAAGATTGGGCTGATCATCTTGCTCAAGTTGAATCCATCTCTCATAGTAATCACAGAGCCGACATTGGTGAGAACATCGCTTATGGTTCTACCAACACTAACTCTATCACTGACTTTATTGATCTCTGGGGTGGTGAGGGTGATTACTTTATTGCTGGAAAAGCCTATCCTAAGTGCGCTACTGGTAGTGAGTCTGATATCGTCCATTATACTCAGATGGTCTGGAGAGCCACTACTTCAGTCGGATGTGGTGTGGGTGAAAACGATGGTGTGACCTACTATGTCTGCCAATATTATCCAAGAGGAAATATCAGAGGACAAATTGCGTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_172916.p1 GENE.R_Transcript_172916~~R_Transcript_172916.p1 ORF type:5prime_partial len:357 (+),score=57.38,CAP|PF00188.22|5e-20 R_Transcript_172916:3-1073(+)
HMKLVFIFALAVAFTCVANAAFNPPVYRQGDKRWGSKQLGFGSYTIAKKGCFLTCQTSMIASQGITINNGETPDPGNMNTWFKNNGGFLSGGGMLNYKAPEKFGFKYEKVTSKSSAVAAFNSGKFVLCHVENLSHWVLVTSVTSSGYEVMDPAGVETSYKFSQVPEYAVYTAPAGKPGTKSSSSAESTPEADPISRPEPEPETSFEDEPQEQDDAFVEESLSIQNEWRYAVGVPNLIWNATLAASAQDWADHLAQVESISHSNHRADIGENIAYGSTNTNSITDFIDLWGGEGDYFIAGKAYPKCATGSESDIVHYTQMVWRATTSVGCGVGENDGVTYYVCQYYPRGNIRGQIAF*

Click here to download the sequence:
Link to NCBI Protein BLAST